Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g977 ATGGCGTCTTCGCAAGTGGAAATCGCTTCGTCTTCACCATTTGGCTGTGTTCTCAGAGATCACAATCGTCGGGAACCCCCCTGCAGAGACAGCAATGCCCAAGCTGCTTTCCACAACAACCTCAAAGTATTCGTTAGGGATCACGTCCGCCCCAGCATTTCGATCATCCCCTCCGACGAAAATTCTCATCCTCCTCCTGCTGCCTTCTATTGTTGGATTCCCCAACAACAGGGGATTCGTCACCGTCGCCGTAGCCTCTCTTTCCGCACCAACAGGGAGGAAAAATCAAAGGACATGAGCGGGAGGGAGTCGGGAATTATGGATCAATGGGTCACTCGGCAAGCCCAAGAAACGGTATCCACCACTGAGAGACATACCCACGAGGCCCAGCTCCTGTCTCCATCCCAATTTCCGCCAGACCATTCCCCCTCTCAATCCAGTAATTCCCCCGATGTCCCCAATCTTGGAGCTTCTTCCCTGGTTCAAATGTGGGAGGCAAGGGTCAGTCGCTCCGATAGTTTGAATTCCTTGGCTGTTAGCAGGACCAACTCTGGCTTTAGCTACACTGAAATTGCTGAAGAACCTTCCTCAAGGCCCTCCGAAGTTTGTGAACCCGCTGGTGAAAGATATGATACTCACACAAATAACGGCGATTCATATCCAGATTGGGAATCTGAGAGAACAGCCCCCAGCGACCAACCTTTATCATCACAGGGTCAGGATTCTGATGCTGGAGAAAATGAGAGGGTTAGAGTTGCAGATATCATTAGGAGGTTGACATCCGGAAAACATCGAGCCCAGAATTCCTTAATGTGTTGCAGCGACGACAATGACCACGAGCAGCCAGTTGTGACTTCTCCCCGGCTAAGGGGGAGACAAGCATATATCAATTTGCTTACGCAAATGGAGCACGACAGGCAGAGGGAGCTTGGCCGAGTGGCGGACTGTCAAGCAGTTTCAAGGTTCCCGCATCGAGGTCGCATTCAGTCAATGCTTAGGCTTAGATTCCTACACCAGGGAATGACAGTACATGATCAACTGCGGCCATTGTCAAGAGGATCTGAATTGGGCCCTGACAAATATAGTACAGGAGTTAGGCATAATGGTGGGATAGCCTTGAGTTACATGACTAACTCAAGAAAGCTAAGATTTAGCACAGGAGTTGAGCATGGTAGTGTGACAGCCCAAAGTTGTGTTCCAAATTCAAGAAGCCCTCCAAATAACACCCTGGCTTTTGAAAATTCTCCTACTTCCAATCAGATCAGTGAAGACATTCATCGTCAGGAAGTCAGTACTAGTGAGCCACAGAGTACAACCTCAGCAGAGCAGTTGATGTCATATGCAACAGAATATGTTCAGGAAGATGCTGGTCCAAGTTCAGATACATGGCAAGGGCCAAGCTTTGAGGTTGGCAGTCTTGACTCAGAAGAGCAAGAAACTGCCGATAGAATGACAACCTTGAATAATTGGGATATGAATATTAATGCAGAAGAAGAAGAGGTTGGAGAACTGAATTTATTTGGAACCCATTATGACTGGTTTAGTGAAATTTCTCGCCCACGGAGATATTGGGAAGATCTCAGGCAAGCATGGTACCAGGAGATGCTTGAAAGTAACTCAGACAATGAGGAGATACGACAACTCCTTGAAAGAAGAAGAGTCTCAACTTTTCTAGCAAGTGACTTCCGGGAGAGAATGGACCAATTGATGACGTCTCACTTACAGCAACAACTGCATCCAGAGGGTAGTCAAAGAGAAGTACAGTCAAAAGAAGAAAGAGGAAGACAAGGGATTTCTGTTGTGCATCAGAGCCGCAACACAAGTGATCATTTCAATGAAGATACATCATCATTGCAGTTGCCTTCTCCATCTTTATTCAGGTCAGGGGACTTACAGGAAATGGATCTCATATATGATTTGAGAGGACAAATGAAGCAACTCCATCATGAGATGGCTGAGCTACGAAAATCAATAAATTGCTGCATGAATATGCAGGTAAAATTGCAACAATTCATGAAGCAGAAGGTTTCAGCTGCAAGTCATTCTGGTGAGTTGAGAAAGTTGAATAAATCACTCAACTCAGCACCAAGGAAAGGAAATTGCTGTCTTTGTTATGAAAAGAAAATCGACTCACTTTTATACAGATGTGGTCACATGTGTACCTGTCTCAAGTGCGCCCATGAATTGCAGTCGAGCACTGGGAAATGCCCAATCTGTCAAGCTTCAATTGTTGATGTTGTGCAGGCATATGCTGATGCATAG 2262 46.29 MASSQVEIASSSPFGCVLRDHNRREPPCRDSNAQAAFHNNLKVFVRDHVRPSISIIPSDENSHPPPAAFYCWIPQQQGIRHRRRSLSFRTNREEKSKDMSGRESGIMDQWVTRQAQETVSTTERHTHEAQLLSPSQFPPDHSPSQSSNSPDVPNLGASSLVQMWEARVSRSDSLNSLAVSRTNSGFSYTEIAEEPSSRPSEVCEPAGERYDTHTNNGDSYPDWESERTAPSDQPLSSQGQDSDAGENERVRVADIIRRLTSGKHRAQNSLMCCSDDNDHEQPVVTSPRLRGRQAYINLLTQMEHDRQRELGRVADCQAVSRFPHRGRIQSMLRLRFLHQGMTVHDQLRPLSRGSELGPDKYSTGVRHNGGIALSYMTNSRKLRFSTGVEHGSVTAQSCVPNSRSPPNNTLAFENSPTSNQISEDIHRQEVSTSEPQSTTSAEQLMSYATEYVQEDAGPSSDTWQGPSFEVGSLDSEEQETADRMTTLNNWDMNINAEEEEVGELNLFGTHYDWFSEISRPRRYWEDLRQAWYQEMLESNSDNEEIRQLLERRRVSTFLASDFRERMDQLMTSHLQQQLHPEGSQREVQSKEERGRQGISVVHQSRNTSDHFNEDTSSLQLPSPSLFRSGDLQEMDLIYDLRGQMKQLHHEMAELRKSINCCMNMQVKLQQFMKQKVSAASHSGELRKLNKSLNSAPRKGNCCLCYEKKIDSLLYRCGHMCTCLKCAHELQSSTGKCPICQASIVDVVQAYADA* 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14854162 14859888 - Vvi1g977 Vvi1g977 770177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g977 753 PANTHER BNAC05G24000D PROTEIN 630 752 - -
Vvi1g977 753 PANTHER BNAC05G24000D PROTEIN 1 622 - -
Vvi1g977 753 MobiDBLite consensus disorder prediction 82 156 - -
Vvi1g977 753 ProSiteProfiles Zinc finger RING-type profile. 701 740 IPR001841 -
Vvi1g977 753 MobiDBLite consensus disorder prediction 584 598 - -
Vvi1g977 753 MobiDBLite consensus disorder prediction 413 438 - -
Vvi1g977 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 682 753 IPR013083 -
Vvi1g977 753 Pfam Zinc finger, C3HC4 type (RING finger) 698 745 - -
Vvi1g977 753 PANTHER BNAC05G24000D PROTEIN 630 752 - -
Vvi1g977 753 PANTHER BNAC05G24000D PROTEIN 1 622 - -
Vvi1g977 753 MobiDBLite consensus disorder prediction 574 623 - -
Vvi1g977 753 CDD mRING-HC-C3HC5_NEU1 700 739 - -
Vvi1g977 753 CDD HP 217 310 - -
Vvi1g977 753 MobiDBLite consensus disorder prediction 189 248 - -
Vvi1g977 753 SUPERFAMILY RING/U-box 700 746 - -
Vvi1g977 753 MobiDBLite consensus disorder prediction 599 623 - -
Vvi1g977 753 MobiDBLite consensus disorder prediction 107 156 - -
Vvi1g977 753 MobiDBLite consensus disorder prediction 87 102 - -
Vvi1g977 753 MobiDBLite consensus disorder prediction 229 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g977 - - - vvi:100253105 1427.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g02124 . . . . . . . . . . . . . . . . . . Csa05g01397 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009492 2 0 2 2 0 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 32