Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g979 ATGGCGATGCTGAAGAGAATTGTATGGGTTACTGTTATTGTTGCCTTGATGTGCCTTTCATCTGGTTATTATGTGTTGTGCAAGGAAGAGGAGGAGACTCTGAGGATTCTGTTGGAGATTAAGGAGTCATTTGAGGAAGACCCTCAAAATGTGTTGGATGAGTGGTCTGTGGATAATCCCAGTTTCTGTAGCTGGAGAAGAGTTTCATGTAGTGACGGCTACCCTGTTCATCAAGTGGTAGCTCTCAACCTCTCTCAGTCCTCATTAGCTGGCTCCATATCTCCCTCCCTTGCTCGTTTAACAAACCTGCTCCACCTTGATCTTTCTTCTAACCGCCTCACCGGTTCCATTCCACCTAACCTTTCTAACCTTTCTTCTTTGCTTTCTCTACTCCTTTTTTCTAATCAACTTTCTGGTTCCATTCCAGCTCAACTCAGTTCCCTCACCAATCTCCGAGTCATGAGAATTGGGGACAATGCTCTCAGCGGTTCAATTCCTCCCTCCTTTGGGAATCTCCTCAACTTGAATCTCCAACTTCTGAACCTGGCCAACAACACTCTATCTGGGGCGATTCCAGGCCAACTTGGTGAATCGACTCAGCTTGTTTATCTCAACCTTATGGCCAATCAACTTGAAGGTCCAATCCCAAGGTCTCTGGCACGCTTGGGTAGTCTTCAGACTCTTGATTTATCGGTGAATAAGCTCACTGGACAAATTCCACCAGAATTGGGCAACATGGGGCAGTTGCTAACTATCTTGGACCTGGCAGACAACAGCCTTTCTGGAGGCATCCCTGCGACATTTGGATTCCTCCGAGTCCTTGAGGAGCTGATGCTTTACAACAACTCTCTTGAAGGTAATCTCCCTGACGAGCTGATCAATGTTGCCAACCTGACCAGAGTAAATCTCTCCAATAACAAATTGAATGGGGCAATCCCCAGGACCCTGGGAGAAATCTACCAACTTTCACTTGTGGATTTCTCAGGCAATTCGCTCACTGGATCAGTACCAGCTGAGCTTTCATTGTGCAAGAAACTGACCCATATTGATCTCAATAGCAACTTTCTTTCTGGGCCAATCCCATCCTGGCTTGGAAGTTTGCCCAATTTAGGAGAGCTCAAACTCTCCTTCAACTTATTTTCTGGGCCCCTTCCTCACGAACTATTTAAGTGCTCCAATCTGCTGGTTCTTTCACTTGATAACAATCTCCTTAATGGGACTCTGCCTTTGGAAACCGGTAATCTTGCATCCCTTAATGTTCTCAACCTCAACCAAAACCAATTTTATGGACCAATTCCTCCTGCCATAGGTAACTTAAGCAAGCTTTATGAACTTCGTCTCTCAAGAAACAGCTTTAATGGTGAAATACCTATTGAGCTTGGAGAACTCCAGAATCTTCAAAGTCTTAACTTCTCCTATAACAACCTTGAGGGCAAATTGGACAAGGAATTCTTGCACTGGCCAGCAGAGACGTTCATGGGAAACCTGCCATTTTCAACCATTGCTGCAATTGTTCTACTGATGATTGGAGTTGCCCTGTTTCTTAAAGGCAAGCGAGAGTCCCTTAACGCAGTGAAGTGTGTTTACTCTTCCAGTTCTTCCATAGTACACCGAAGACCACTCCTCCCCAACACTGCTGGGAAGCGAGATTTCAAATGGGGAGACATAATGCAAGCTACAAACAATCTGAGTGACAATTTTATAATTGGGTCAGGAGGGTCTGGAACGATCTACAAGGCTGAGTTATCCAGTGAAGAAACAGTGGCAGTGAAGAAGATACTGAGGAAAGATGATCTCCTGCTGAATAAAAGCTTTGAAAGAGAAATTAGGACCCTGGGAAGGGTTAGGCACAGGCACCTAGCAAAGTTGCTGGGTTGTTGTGTCAACAAAGAAGCAGGTTTTAATCTGTTGGTATACGAGTACATGGAGAATGGAAGCTTATGGGATTGGCTGCACCCAGAATCAGTGAGTAGCAAGAAAAGGAAGAGCCTTGACTGGGAGGCGAGGTTAAGGGTTGCAGTGGGATTAGCTAAGGGAGTGGAGTATCTCCACCATGACTGTGTCCCCAAGATCATTCACAGGGACATCAAGTCCAGCAATGTGTTGCTTGACTCTAATATGGAGGCACATTTAGGGGATTTTGGGCTGGCAAAGACTCTGGTTGAGAATCACAACTCCTTCAACACCGACTCAAACTCATGGTTCGCTGGGTCTTACGGTTATATTGCTCCAGAATATGCTTATTCATTGAAGGCAACGGAGAAAAGTGATGTTTATAGTTTGGGTATCGTGCTGGTTGAGCTAGTGAGTGGAAAGATGCCAACAGACGAAATTTTTGGGACGGATATGAACATGGTGAGGTGGGTTGAATCGCACATTGAAATGGGACAATCGAGCCGAACGGAGTTGATTGATTCTGCATTGAAGCCAATTCTACCAGATGAAGAATGCGCAGCATTCGGAGTGCTTGAGATCGCACTGCAATGCACAAAAACTACCCCAGCAGAAAGGCCGTCTTCTCGCCAAGTTTGCGATTCCCTAGTCCATTTGTCCAACAACAGAAATAGAATGCAAATAAGTGCGTCCAGGACCACCCACAAGAACTGGTTTGGAAGCCACATTTTTTACAAGCTTACCGCCATTGGAAAATATCTTATAGTCCTAGCCAACCTGAGTGCTAATCTTCGTCAGCATCTGCAATTGAAAGTAAAAAAAATATGA 2721 45.09 MAMLKRIVWVTVIVALMCLSSGYYVLCKEEEETLRILLEIKESFEEDPQNVLDEWSVDNPSFCSWRRVSCSDGYPVHQVVALNLSQSSLAGSISPSLARLTNLLHLDLSSNRLTGSIPPNLSNLSSLLSLLLFSNQLSGSIPAQLSSLTNLRVMRIGDNALSGSIPPSFGNLLNLNLQLLNLANNTLSGAIPGQLGESTQLVYLNLMANQLEGPIPRSLARLGSLQTLDLSVNKLTGQIPPELGNMGQLLTILDLADNSLSGGIPATFGFLRVLEELMLYNNSLEGNLPDELINVANLTRVNLSNNKLNGAIPRTLGEIYQLSLVDFSGNSLTGSVPAELSLCKKLTHIDLNSNFLSGPIPSWLGSLPNLGELKLSFNLFSGPLPHELFKCSNLLVLSLDNNLLNGTLPLETGNLASLNVLNLNQNQFYGPIPPAIGNLSKLYELRLSRNSFNGEIPIELGELQNLQSLNFSYNNLEGKLDKEFLHWPAETFMGNLPFSTIAAIVLLMIGVALFLKGKRESLNAVKCVYSSSSSIVHRRPLLPNTAGKRDFKWGDIMQATNNLSDNFIIGSGGSGTIYKAELSSEETVAVKKILRKDDLLLNKSFEREIRTLGRVRHRHLAKLLGCCVNKEAGFNLLVYEYMENGSLWDWLHPESVSSKKRKSLDWEARLRVAVGLAKGVEYLHHDCVPKIIHRDIKSSNVLLDSNMEAHLGDFGLAKTLVENHNSFNTDSNSWFAGSYGYIAPEYAYSLKATEKSDVYSLGIVLVELVSGKMPTDEIFGTDMNMVRWVESHIEMGQSSRTELIDSALKPILPDEECAAFGVLEIALQCTKTTPAERPSSRQVCDSLVHLSNNRNRMQISASRTTHKNWFGSHIFYKLTAIGKYLIVLANLSANLRQHLQLKVKKI* 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14954684 14959548 - Vvi1g979 Vvi1g979 770179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g979 906 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Vvi1g979 906 Gene3D Ribonuclease Inhibitor 177 249 IPR032675 -
Vvi1g979 906 Gene3D Ribonuclease Inhibitor 29 176 IPR032675 -
Vvi1g979 906 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 176 - -
Vvi1g979 906 Coils Coil 27 47 - -
Vvi1g979 906 Gene3D Transferase(Phosphotransferase) domain 1 642 871 - -
Vvi1g979 906 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 499 858 - -
Vvi1g979 906 Gene3D Ribonuclease Inhibitor 250 322 IPR032675 -
Vvi1g979 906 SUPERFAMILY Protein kinase-like (PK-like) 543 848 IPR011009 -
Vvi1g979 906 SUPERFAMILY L domain-like 33 334 - -
Vvi1g979 906 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515
Vvi1g979 906 Pfam Leucine Rich Repeat 345 367 IPR001611 GO:0005515
Vvi1g979 906 SMART LRR_typ_2 271 295 IPR003591 -
Vvi1g979 906 SMART LRR_typ_2 100 124 IPR003591 -
Vvi1g979 906 SMART LRR_typ_2 148 171 IPR003591 -
Vvi1g979 906 SMART LRR_typ_2 222 246 IPR003591 -
Vvi1g979 906 SMART LRR_typ_2 415 439 IPR003591 -
Vvi1g979 906 SMART LRR_typ_2 463 486 IPR003591 -
Vvi1g979 906 SMART LRR_typ_2 367 391 IPR003591 -
Vvi1g979 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Vvi1g979 906 SUPERFAMILY L domain-like 250 488 - -
Vvi1g979 906 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 176 245 - -
Vvi1g979 906 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 468 496 - -
Vvi1g979 906 ProSiteProfiles Leucine-rich repeat profile. 102 125 IPR001611 GO:0005515
Vvi1g979 906 ProSiteProfiles Protein kinase domain profile. 563 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g979 906 Gene3D Phosphorylase Kinase; domain 1 529 641 - -
Vvi1g979 906 ProSitePatterns Protein kinases ATP-binding region signature. 569 592 IPR017441 GO:0005524
Vvi1g979 906 Pfam Protein kinase domain 568 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g979 906 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 310 468 - -
Vvi1g979 906 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 237 312 - -
Vvi1g979 906 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 176 245 - -
Vvi1g979 906 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 310 468 - -
Vvi1g979 906 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 237 312 - -
Vvi1g979 906 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 499 858 - -
Vvi1g979 906 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 1 176 - -
Vvi1g979 906 Pfam Leucine rich repeat 250 308 IPR001611 GO:0005515
Vvi1g979 906 Gene3D Ribonuclease Inhibitor 323 501 IPR032675 -
Vvi1g979 906 SMART serkin_6 563 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g979 906 PRINTS Leucine-rich repeat signature 222 235 - -
Vvi1g979 906 PRINTS Leucine-rich repeat signature 103 116 - -
Vvi1g979 906 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 468 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g979 - - - vvi:100254655 981.859
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76530 PF00069 Pkinase 7.90E-44 CL0016 Vvi PK