Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g980 ATGCATTTCTCTACGCCCAGCTGCTTCCTCTTGCCTATCCTCGCTCTGCTCTTGATTTCAGCCTCATCAGCTCAATATGAAGAGCATGAAGAAGAATTAACTGACCCTCTCACTTATCTGGAAAATCCATCGTTGAATGAGATGTTGCCTGGCCTGTCATTTTCTTATTATCGTCAGACTTGTCCAGATCTTGAAGCCATTATCAACAGAAAAGTCAAGGAATGGATAGACAAGGATTACACTCTTGCTGCCAGTCTCATCAGACTGCATTTCCATGATTGCGCAGTTAAGGGATGTGATGCTTCCATTCTTTTAGACCATCCTGGGAGCGAGAGATGGGCAGATGCCAGCAAGACATTGAGAGGGTTCCAAGTGATTGATGATATCAAAGCAGAAGTTGAGAGGAAGTGCCCCAAGACCGTGTCATGTGCAGACATTCTGACCGCTGCAGCCAGAGATGCCACCATTCTGATCCCATTCTGGATGGTTCCTTACGGGCGGAAAGATGGGCGAGTATCTATTGACAAGGAAGCTCAAACCGTGCCCATGGGACGGGAAAACGTGACTGCTCTGCTTGAATTTTTCCAGTCCAAGGGACTGAATGTACTTGATTTGGTTGTCCTCTCAGGAGCGCACACCATCGGGAGGACCACATGTGGTGCAATGCAACACCGGCTGTATGACTTCCACGGCACAGGCGAACCCGATCCATCTATTTCCCCTAAATATTTGAAGTTCTTGAGAAGAAAGTGCAGATGGGCCTCAGAGTACGTAGACCTAGACGCTATAACCCCACGGACTTTTGATGTCATGTACTACAAAAATCTTCAGCACAACATGGGACTTTTAGCCACTGATCAAATGCTAGGCTCCGATTCAAGGACTTCAGATCTTGTAGCCACATTGGTTTCCAAACCCTCAATCTTCTACAGCCAATTTGCATTGTCAATGGAGAAGCTTGGAAATACTCAGGTCCTTACAGGTGAAGACGGCGAAATCCGAGTTAACTGCAATTTTGTCAATCCTTGA 1029 46.55 MHFSTPSCFLLPILALLLISASSAQYEEHEEELTDPLTYLENPSLNEMLPGLSFSYYRQTCPDLEAIINRKVKEWIDKDYTLAASLIRLHFHDCAVKGCDASILLDHPGSERWADASKTLRGFQVIDDIKAEVERKCPKTVSCADILTAAARDATILIPFWMVPYGRKDGRVSIDKEAQTVPMGRENVTALLEFFQSKGLNVLDLVVLSGAHTIGRTTCGAMQHRLYDFHGTGEPDPSISPKYLKFLRRKCRWASEYVDLDAITPRTFDVMYYKNLQHNMGLLATDQMLGSDSRTSDLVATLVSKPSIFYSQFALSMEKLGNTQVLTGEDGEIRVNCNFVNP* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14982722 14984281 + Vvi1g980 Vvi1g980 770180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g980 342 Pfam Peroxidase 70 302 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 Gene3D Peroxidase, domain 2 182 320 - -
Vvi1g980 342 ProSitePatterns Peroxidases active site signature. 83 94 IPR019794 GO:0004601
Vvi1g980 342 Gene3D - 55 341 - -
Vvi1g980 342 PRINTS Haem peroxidase superfamily signature 83 97 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Haem peroxidase superfamily signature 141 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Haem peroxidase superfamily signature 204 219 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Haem peroxidase superfamily signature 261 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 CDD secretory_peroxidase 51 340 IPR033905 GO:0004601|GO:0042744
Vvi1g980 342 PANTHER PEROXIDASE 25-RELATED 38 339 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PANTHER PEROXIDASE 38 339 - -
Vvi1g980 342 PRINTS Plant peroxidase signature 61 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Plant peroxidase signature 85 105 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Plant peroxidase signature 121 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Plant peroxidase signature 140 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Plant peroxidase signature 203 215 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Plant peroxidase signature 259 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Plant peroxidase signature 275 292 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 PRINTS Plant peroxidase signature 315 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 ProSiteProfiles Plant heme peroxidase family profile. 51 341 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g980 342 ProSitePatterns Peroxidases proximal heme-ligand signature. 204 214 IPR019793 -
Vvi1g980 342 SUPERFAMILY Heme-dependent peroxidases 51 342 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g980 K00430 - vvi:100249548 674.47