Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g986 ATGAACTCACTCATATCACGTGAAGGTTATGTTGTCTATCCGCATAAGGAAAGGGTGGATGCCAGTGAGAGCTACACATTAGACAGTATAAGACACTTTTTAATCAGGCAAGAGGATAGCATCATATTTAGCCTCTTGGAGAGGGCTCAATATTATTACAATGCAGACACATATGACCATCATGCCTTCTCCAAAGATGGGTTTCATGGCTCTTTGGTTGAGTTCATGATCAAAGAAACTGAAAAACTTCATGCCCAGATGGGTAGATACGATAGTCCAAATGAGCATCCTTTCTTCCCGGCTCAATTACCTAAGCCGATGCTTCCTCCTTTGAAATACCCTCAGGTCCTGCATCCTTGTGCTGATTCAGTCAATCTAAACAATAAGGTTTGGAATATATATTTCAAAAATCTCCTTCCAAGGTTGGTTAAAGCCGGTGATGATGGTAATCATGGATCAGCTGCTGTGTGCGACACAAACTGCTTGCAAGCTCTCTCAAAGAGGATCCACTACGGAAAATTTGTAGCAGAGGCTAAATTTCTAGAATCCTCGGATGTGTATGAGGCTGCCATTAGAGAGCAAGATAGGGATAAACTCATGGCATTGCTGACCTATGAGGCAGTGGAAGCAGCAATCAAGAAGAGAGTAGAAGCGAAGGCCAAAGCATTTGGGCAGGAGGTGAGAAACATGGGAGAGGGAGATGATGGGGATGATCCAGCATATAAGATCAAGCCAAGGTTAGTTGCCAATCTGTACGGAGACTGGATCATGCCACTTACCAAGGAAGTTCAGGTTGAATACCTGTTGAGAAGGTTGGATTAA 822 43.43 MNSLISREGYVVYPHKERVDASESYTLDSIRHFLIRQEDSIIFSLLERAQYYYNADTYDHHAFSKDGFHGSLVEFMIKETEKLHAQMGRYDSPNEHPFFPAQLPKPMLPPLKYPQVLHPCADSVNLNNKVWNIYFKNLLPRLVKAGDDGNHGSAAVCDTNCLQALSKRIHYGKFVAEAKFLESSDVYEAAIREQDRDKLMALLTYEAVEAAIKKRVEAKAKAFGQEVRNMGEGDDGDDPAYKIKPRLVANLYGDWIMPLTKEVQVEYLLRRLD* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15229259 15243545 + Vvi1g986 Vvi1g986 770186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g986 273 PANTHER CHORISMATE MUTASE 13 273 - -
Vvi1g986 273 TIGRFAM CM_pl-yst: chorismate mutase 26 273 IPR008238 GO:0004106|GO:0009073
Vvi1g986 273 ProSiteProfiles Chorismate mutase domain profile. 18 273 IPR008238 GO:0004106|GO:0009073
Vvi1g986 273 PANTHER CHORISMATE MUTASE 13 273 IPR008238 GO:0004106|GO:0009073
Vvi1g986 273 PIRSF Chor_mut_AroQ_eu 14 273 IPR008238 GO:0004106|GO:0009073
Vvi1g986 273 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 18 273 IPR037039 GO:0004106|GO:0009073
Vvi1g986 273 SUPERFAMILY Chorismate mutase II 17 273 IPR036263 GO:0046417
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g986 K01850 E5.4.99.5; chorismate mutase [EC:5.4.99.5] - vvi:100263367 524.628
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g986 Vvi14g1594 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02921 . . . . Car15g00248 Cpe13g00970 . . . . . . . . . . . . . . . . . Chy09g00214 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001686 1 4 1 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 4 2 70