Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g988 ATGGAGAAAGCTCTTATGAAGGTAAGCAGCTTGAAAGCCGGGAGCTTTTGGATATCAAGCAAAGCCAAGGAGGAGTTCTCTAATATCACTCAGGACATTACGGACATTTGTTTCAAAAATGGGTTACTCTGCAAGCAAAAACATGAGAAGTATTTGTCAAATACTGTGGAAGAGAAGGCAAAGTGGGTTTTCAACAAGCTAAAAGGAAAGCCACTGAAAACCTTGCCTGATCTTCTCCGAGAGTACAACTTACCACCTGGCCTCTTTCCCCAGAACATAACATGCTACGAGTTTGATGAATCAAAGGCCAAGCTGACTGTGTACCTTCCCTCTGCCTGTGAAGTCAGCTTCAGCGACTCCTCTGTAATAAGGTATGCAACCAGGGTAAAAGGAATTCTTCTGAGGGGAAAGCTCACAGGAATAGAGGGCATGAAGACCAAGGTCCTGGTATGGGTAAAGGTCACAAATGTTGCAGTTGAAAGCTATAAGTCTGACAAGGTGTGGTTTACAGCGGGTGTGAAGAAGTCAAGACCTAAGGATGCTTATGAAATGCCCCGTGATGCTGTCAGAGTACAAGAATTTTGA 585 44.1 MEKALMKVSSLKAGSFWISSKAKEEFSNITQDITDICFKNGLLCKQKHEKYLSNTVEEKAKWVFNKLKGKPLKTLPDLLREYNLPPGLFPQNITCYEFDESKAKLTVYLPSACEVSFSDSSVIRYATRVKGILLRGKLTGIEGMKTKVLVWVKVTNVAVESYKSDKVWFTAGVKKSRPKDAYEMPRDAVRVQEF* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15304652 15307940 + Vvi1g988 Vvi1g988 770188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g988 194 PANTHER - 49 194 - -
Vvi1g988 194 PANTHER T31J12.3 PROTEIN-RELATED 49 194 IPR007493 -
Vvi1g988 194 Pfam Protein of unknown function, DUF538 77 183 IPR007493 -
Vvi1g988 194 SUPERFAMILY At5g01610-like 13 193 IPR036758 -
Vvi1g988 194 Gene3D - 53 194 IPR036758 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g988 - - - vvi:100258240 346.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g988 Vvi17g596 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g988 Blo01g00443 . Bda01g02137 . . . . . Cmo04g01768 Cmo18g01142 . Cma18g01121 . Car18g01033 Sed06g1493 Cpe09g00207 Cpe01g01493 Bhi07g01520 Tan04g1033 Cmetu10g0314 Lac13g0354 Hepe10g1778 . . Cla05g02411 Cam05g2589 Cec05g2621 Cco05g2660 Clacu05g2590 Cmu05g2444 . . . . . Lsi04g00383 Csa05g02493 Chy10g01041 Cme10g00378 . . . . . Bpe02g02326 Bma01g00113 . . . . Cma04g01687 . Car04g01724 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002962 1 2 1 1 1 2 1 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 1 2 2 2 2 2 2 2 54