Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g99 ATGTCAATGTTATCAAAATTACGCTGTATCACCTTCGATGTCACGGGTACACTCATAGCTTACAAAGGTGAGCTTGGTGATTACTATTGCATGGCAGCCAAATCTATTGGATTGCCATGTCCTGACTACAAAAGGGTCCACGAGGGCTTCAAACTTGCATACACAGAGATGGCAAAGAAGTATCCATGTTTTGGATATGCAGCAAAAATGCCTAACATTGTGTGGTGGAAAACTTGTGTTAGAGACTCTTTCGTCAGGGCAGGATATGATTACGATGAGGAGACATTTGAGAAGGTGTTCAGACGTATATACTCAACATTTGGTTCATCTGCACCATATACCATCTTCCCCGACTCCCAACCATTTCTCAGATGGGTACATGAAAAGGGTCTTAAAGTTGGGATCATTAGCAATGCAGAGTATCGGTATAAAGATGTCATCCTTCCTGCCTTGGGTTTGAACCAGGGAACCGAATGGGATTTTGGCGTGTTCTCTGGTCTTGAAGGTGTAGAGAAACCAAACCCCAGGATTTATGAGATTGCCCTTGAAAGGGCTGGAAACATTGCACCAGAAGAAGTGTTGCACATTGGTGACAGCATGCGCAAAGACTATTTGCCGGCGAAGGGTGTGGGGATGCATGCACTTCTGTTGGACAGATTTAAGACCCCCGACGCCATTGAGTGGTCCAAATCTGGCGCAACTGTGCTTCCTGATTTGGTGTCGGTGCAGGAATGGCTCACTTCACAGAACTAA 753 45.42 MSMLSKLRCITFDVTGTLIAYKGELGDYYCMAAKSIGLPCPDYKRVHEGFKLAYTEMAKKYPCFGYAAKMPNIVWWKTCVRDSFVRAGYDYDEETFEKVFRRIYSTFGSSAPYTIFPDSQPFLRWVHEKGLKVGIISNAEYRYKDVILPALGLNQGTEWDFGVFSGLEGVEKPNPRIYEIALERAGNIAPEEVLHIGDSMRKDYLPAKGVGMHALLLDRFKTPDAIEWSKSGATVLPDLVSVQEWLTSQN* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 995576 997132 - Vvi1g99 Vvi1g99 769299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g99 250 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 8 216 IPR011949 -
Vvi1g99 250 Gene3D - 10 221 IPR023214 -
Vvi1g99 250 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 129 211 IPR006439 -
Vvi1g99 250 Gene3D - 23 108 IPR044924 -
Vvi1g99 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 7 18 IPR006439 -
Vvi1g99 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 126 139 IPR006439 -
Vvi1g99 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 159 175 IPR006439 -
Vvi1g99 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 206 219 IPR006439 -
Vvi1g99 250 CDD HAD_dREG-2_like 114 244 - -
Vvi1g99 250 SUPERFAMILY HAD-like 7 246 IPR036412 -
Vvi1g99 250 Pfam haloacid dehalogenase-like hydrolase 8 208 - -
Vvi1g99 250 PANTHER OS02G0173600 PROTEIN 1 249 - -
Vvi1g99 250 PANTHER OS02G0173600 PROTEIN 1 249 - -
Vvi1g99 250 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 7 247 - -
Vvi1g99 250 SFLD Haloacid Dehalogenase 7 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g99 - - - vvi:100249255 522.316
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g99 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010931 1 0 1 2 1 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 0 2 1 30