Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g99 ATGTCAATGTTATCAAAATTACGCTGTATCACCTTCGATGTCACGGGTACACTCATAGCTTACAAAGGTGAGCTTGGTGATTACTATTGCATGGCAGCCAAATCTATTGGATTGCCATGTCCTGACTACAAAAGGGTCCACGAGGGCTTCAAACTTGCATACACAGAGATGGCAAAGAAGTATCCATGTTTTGGATATGCAGCAAAAATGCCTAACATTGTGTGGTGGAAAACTTGTGTTAGAGACTCTTTCGTCAGGGCAGGATATGATTACGATGAGGAGACATTTGAGAAGGTGTTCAGACGTATATACTCAACATTTGGTTCATCTGCACCATATACCATCTTCCCCGACTCCCAACCATTTCTCAGATGGGTACATGAAAAGGGTCTTAAAGTTGGGATCATTAGCAATGCAGAGTATCGGTATAAAGATGTCATCCTTCCTGCCTTGGGTTTGAACCAGGGAACCGAATGGGATTTTGGCGTGTTCTCTGGTCTTGAAGGTGTAGAGAAACCAAACCCCAGGATTTATGAGATTGCCCTTGAAAGGGCTGGAAACATTGCACCAGAAGAAGTGTTGCACATTGGTGACAGCATGCGCAAAGACTATTTGCCGGCGAAGGGTGTGGGGATGCATGCACTTCTGTTGGACAGATTTAAGACCCCCGACGCCATTGAGTGGTCCAAATCTGGCGCAACTGTGCTTCCTGATTTGGTGTCGGTGCAGGAATGGCTCACTTCACAGAACTAA 753 45.42 MSMLSKLRCITFDVTGTLIAYKGELGDYYCMAAKSIGLPCPDYKRVHEGFKLAYTEMAKKYPCFGYAAKMPNIVWWKTCVRDSFVRAGYDYDEETFEKVFRRIYSTFGSSAPYTIFPDSQPFLRWVHEKGLKVGIISNAEYRYKDVILPALGLNQGTEWDFGVFSGLEGVEKPNPRIYEIALERAGNIAPEEVLHIGDSMRKDYLPAKGVGMHALLLDRFKTPDAIEWSKSGATVLPDLVSVQEWLTSQN* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 995576 997132 - Vvi1g99 Vvi1g99 769299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g99 250 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 8 216 IPR011949 -
Vvi1g99 250 Gene3D - 10 221 IPR023214 -
Vvi1g99 250 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 129 211 IPR006439 -
Vvi1g99 250 Gene3D - 23 108 IPR044924 -
Vvi1g99 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 7 18 IPR006439 -
Vvi1g99 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 126 139 IPR006439 -
Vvi1g99 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 159 175 IPR006439 -
Vvi1g99 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 206 219 IPR006439 -
Vvi1g99 250 CDD HAD_dREG-2_like 114 244 - -
Vvi1g99 250 SUPERFAMILY HAD-like 7 246 IPR036412 -
Vvi1g99 250 Pfam haloacid dehalogenase-like hydrolase 8 208 - -
Vvi1g99 250 PANTHER OS02G0173600 PROTEIN 1 249 - -
Vvi1g99 250 PANTHER OS02G0173600 PROTEIN 1 249 - -
Vvi1g99 250 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 7 247 - -
Vvi1g99 250 SFLD Haloacid Dehalogenase 7 247 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g99 - - vvi:100249255 522.316