Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g991 ATGAAACAAGACAAGGGTCACCGGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAGTTGAGCATGAAGAAAGAGGGTCCTCTCACCAAGAAAGATGGGAAGAACCATGACAAAGCTAATGCCATGCGATCAAAACATTCCGTCACAGAGCAACGCCGAAGGAGCAAGATTAATGAGAGATTTCAGATATTGAGAGATCTCATACCCCATAGTGATCAAAAGAGGGATACAGCGTCATTCCTATTAGAGGTTATTGAGTATGTTCAATATTTACAGGAAAAGGTACAAAAGTATGAAGGGTCATACCAAGGATTGACTCCAGAGCCCACAAAGTTAATGCCATGGAGAAACAGTCACTGGCGTGTTCAAAGTTTTGTTGGTCACCCTCAAGCCATAAATAATGGTTCTGGTCCTGGCTCGGCATTTTCTGGGAAGTTTGATGAGAATAACATCAATATTACTTCAACCATGCTTGTGAAGGCACAGAATCCAGTAGAATCTGACCTTAGCAGGGATGCCACCTGCAAAGCAATGGATCACCAATCTGAGTTTAACAAGGCAATCGTCATGCCCATATCTTTACAGTCAAACATGTCTGCTCCTGTCCAAAGTGAGGGTGGGCTTGTGCATCCTCTTCAGGGACCAGTTTCTGATGCACAATCGGCTGACTGCCCCATCACTAGTGAGACACTTAGTAAAAAAGAGGAGCTAATGATAGAAGGAGGCACAATTAGCATCTCAAGTGCTTATTCTCAGGGGCTATTAAATACTCTGACACAAGCACTGCAGAGTTCTGGTGTGGATCTGTCACAGGCCAGTATCTCAGTACAGATTGATCTTGGAAAGCGGGCAAATAGAGGACTGCCGTCGGGGACTTCCATTGCTAAGGATCATGAGAACCCCCCTCCTAGCAATCATATAATTGCACATCATAGGGATGCAAGCAGTGCCGAGGACTCGGATCAATCACAAAAGAGACTGAAGACATAA 987 44.58 MKQDKGHREEEEEEEEEELSMKKEGPLTKKDGKNHDKANAMRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGLTPEPTKLMPWRNSHWRVQSFVGHPQAINNGSGPGSAFSGKFDENNINITSTMLVKAQNPVESDLSRDATCKAMDHQSEFNKAIVMPISLQSNMSAPVQSEGGLVHPLQGPVSDAQSADCPITSETLSKKEELMIEGGTISISSAYSQGLLNTLTQALQSSGVDLSQASISVQIDLGKRANRGLPSGTSIAKDHENPPPSNHIIAHHRDASSAEDSDQSQKRLKT* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15386734 15409114 - Vvi1g991 Vvi1g991 770191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g991 328 MobiDBLite consensus disorder prediction 282 328 - -
Vvi1g991 328 Pfam Helix-loop-helix DNA-binding domain 42 91 IPR011598 GO:0046983
Vvi1g991 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 112 IPR036638 GO:0046983
Vvi1g991 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 90 IPR011598 GO:0046983
Vvi1g991 328 MobiDBLite consensus disorder prediction 20 54 - -
Vvi1g991 328 CDD bHLH_AtBIM_like 39 115 - -
Vvi1g991 328 MobiDBLite consensus disorder prediction 1 54 - -
Vvi1g991 328 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 328 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vvi1g991 328 SMART finulus 46 96 IPR011598 GO:0046983
Vvi1g991 328 MobiDBLite consensus disorder prediction 302 328 - -
Vvi1g991 328 PANTHER TRANSCRIPTION FACTOR BIM2 1 328 - -
Vvi1g991 328 Gene3D - 38 110 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g991 Vvi17g417 ECH
Vvi1g991 Vvi14g984 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14558 PF00010 HLH 1.60E-13 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g991 - - vvi:100246122 630.557