Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g991 | ATGAAACAAGACAAGGGTCACCGGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAGTTGAGCATGAAGAAAGAGGGTCCTCTCACCAAGAAAGATGGGAAGAACCATGACAAAGCTAATGCCATGCGATCAAAACATTCCGTCACAGAGCAACGCCGAAGGAGCAAGATTAATGAGAGATTTCAGATATTGAGAGATCTCATACCCCATAGTGATCAAAAGAGGGATACAGCGTCATTCCTATTAGAGGTTATTGAGTATGTTCAATATTTACAGGAAAAGGTACAAAAGTATGAAGGGTCATACCAAGGATTGACTCCAGAGCCCACAAAGTTAATGCCATGGAGAAACAGTCACTGGCGTGTTCAAAGTTTTGTTGGTCACCCTCAAGCCATAAATAATGGTTCTGGTCCTGGCTCGGCATTTTCTGGGAAGTTTGATGAGAATAACATCAATATTACTTCAACCATGCTTGTGAAGGCACAGAATCCAGTAGAATCTGACCTTAGCAGGGATGCCACCTGCAAAGCAATGGATCACCAATCTGAGTTTAACAAGGCAATCGTCATGCCCATATCTTTACAGTCAAACATGTCTGCTCCTGTCCAAAGTGAGGGTGGGCTTGTGCATCCTCTTCAGGGACCAGTTTCTGATGCACAATCGGCTGACTGCCCCATCACTAGTGAGACACTTAGTAAAAAAGAGGAGCTAATGATAGAAGGAGGCACAATTAGCATCTCAAGTGCTTATTCTCAGGGGCTATTAAATACTCTGACACAAGCACTGCAGAGTTCTGGTGTGGATCTGTCACAGGCCAGTATCTCAGTACAGATTGATCTTGGAAAGCGGGCAAATAGAGGACTGCCGTCGGGGACTTCCATTGCTAAGGATCATGAGAACCCCCCTCCTAGCAATCATATAATTGCACATCATAGGGATGCAAGCAGTGCCGAGGACTCGGATCAATCACAAAAGAGACTGAAGACATAA | 987 | 44.58 | MKQDKGHREEEEEEEEEELSMKKEGPLTKKDGKNHDKANAMRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGLTPEPTKLMPWRNSHWRVQSFVGHPQAINNGSGPGSAFSGKFDENNINITSTMLVKAQNPVESDLSRDATCKAMDHQSEFNKAIVMPISLQSNMSAPVQSEGGLVHPLQGPVSDAQSADCPITSETLSKKEELMIEGGTISISSAYSQGLLNTLTQALQSSGVDLSQASISVQIDLGKRANRGLPSGTSIAKDHENPPPSNHIIAHHRDASSAEDSDQSQKRLKT* | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15386734 | 15409114 | - | Vvi1g991 | Vvi1g991 | 770191 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g991 | 328 | MobiDBLite | consensus disorder prediction | 282 | 328 | - | - | |
Vvi1g991 | 328 | Pfam | Helix-loop-helix DNA-binding domain | 42 | 91 | IPR011598 | GO:0046983 | |
Vvi1g991 | 328 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 38 | 112 | IPR036638 | GO:0046983 | |
Vvi1g991 | 328 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 40 | 90 | IPR011598 | GO:0046983 | |
Vvi1g991 | 328 | MobiDBLite | consensus disorder prediction | 20 | 54 | - | - | |
Vvi1g991 | 328 | CDD | bHLH_AtBIM_like | 39 | 115 | - | - | |
Vvi1g991 | 328 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Vvi1g991 | 328 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 1 | 328 | IPR044295 | GO:0003700|GO:0006351|GO:0046983 | |
Vvi1g991 | 328 | SMART | finulus | 46 | 96 | IPR011598 | GO:0046983 | |
Vvi1g991 | 328 | MobiDBLite | consensus disorder prediction | 302 | 328 | - | - | |
Vvi1g991 | 328 | PANTHER | TRANSCRIPTION FACTOR BIM2 | 1 | 328 | - | - | |
Vvi1g991 | 328 | Gene3D | - | 38 | 110 | IPR036638 | GO:0046983 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14558 | PF00010 | HLH | 1.60E-13 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g991 | - | - | vvi:100246122 | 630.557 |