Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g992 ATGACACTGTATGACAAAAAAATACTAGGAAAAAGAAAACCATCACCCTTCTCAGCTCCAAGAGACGCCCCTCCAGTCCCAAAGAAAGTTCCCTTCACAGTCTCAGCTCATGGCACATCGTGGCAAGATCCCTACCATTGGATGTCCAACACCGCTGACCCCGACCTCTCCGCATACCTTCGCCACGAAAACTCATATGCTGAAGCTTTCATGGCTGACACCCTTAACCTCCAGCGGACACTCTTTTCTGAGATGAATTCTAGAATGCCCACTAATATTTCCACTCCCACTGAACGCTGGGGGCCATGGTTATACTACCAATACATTCCGGAGGGGAAGGAATACCCTGTACTTTGTCGGAAATTAGCAACTCAGACAAATGGTTGGGCAAAGTCTTTTCTTAATAACGTGATAGGAGAATTTGGAAGGGAGAAAGTTCTCCTGGACTGGAATGAAATTGCAGAAGAATATGGTTATGTTCATGTTGGTACATGTCGAGTTTCTCCAGATCACAACTTTCTTGCATACACACTTGATATAACTGGGAGTGAACGGTTCATGCTTCAAATTAAGGATCTCCATAGTGGCTGTATTCTTCCAGACTTGAGGGTTGATGGGGTTGTTAGCTTGGCATGGGCTCAAGATGGTTGTACTTTATTCTATACAACAACAGATGAAAACCAACGGCCTTACAGGGTGCAATTACAAAGGATGGTTTTCGTGATAAATGCAACCAATCCAGAAGAGGGCTTGCGAAGAATGAATAAGCGTGTCCCTGGTGTACAGTATTTTTTGGAACATCACCATGGTTTTTTCTATATTCTCACAAATGCTCCTTTAACCGATAAGGAATTGTCTGTTGGAGATTATTATTTGGCCAGATGCCAGGTTGACGATGTACAGTTGGCTAATTGGCAGAACATCATCCTCCCAGGTGAAGATATTAGCATACAAGATATGGACATTTTTCATGGACATTTGGTGCTTTTCCTCAATAGCAAAGGTTGCTCTATGATATGCTCCATCAATATGCCAATTGATGTTAATTATAAGCAGCAAATGGAGATTGGTGATCTTAGTCCATGGTTCTTCCCTCTGCCTTCGGGTTTATGTAAAGTTGTTCCATGTTCAAATCATGACTTCATGAACTTCGTCTATCGTGTGGTTGTTTCATCTCCAGTGATGCCTGATATGATCATTGATTATGACATGCGGCAACGGGTATTCTCCATAGTGCAGCAAGAGGAGGTACTAGGTGTTTTTGGTAATAGTGGATCGTTCTCACAGACTCATGACCTAAATACTAACAAACTGTTGGATGCCCAAAATGGTGAGAACAAACATGCCCAGATTACTGAAGTTCAGAGATGGAAGGACTTTTCTGATGCATACTGTTGTGAAAGAAAGGAGGTTATTTCCCATGATGGTGTTGAGGTTCCTCTGACTATTTTGTACTCACGAGAAGCATGGAAGAAGGGTCTGTCTCCTGGCCTTCTACAAGGCTATGGAGCATATGGGGAAGTTCTAGATAAAGCCTGGTGTTCAGATCGTCTGAGTTTGCTTGATCGTGGCTGGGTGGTGGCATTCGCTGATGTGAGGGGTGGTGGAGGTCCGGATTCTTCATGGCACAAATGTGGCAGTGGATTGAACAAGCTAAACTCTATTTATGACTTTGTTTTATGCGGCAAATACCTGGTTAATGAGGGCTATGTTCATGAAGACCAGCTTGGTGCTATTGGATTTAGTGCAGGAGGTCTTCTTGTAGGGGCAGCTATCAATATGTGTCCTGATATGTTTCGTGCTGCTATTTTGAAGGTTCCATTTCTTGACATTTGCAACACATTGTTAGATCCCAATTTGCCTCTCACTTTATTGGACTACGAAGAATTTGGAAATCCTCGAGTACAATCCCAATTTGAGTCCATTTTAAGTTATTCTCCATATGATAATATTTCTCAAGGAAGCTGTCATCCTTCAGTGCTTGTTACGGCATCATTCTATGACTCAAGGGTGGGAGTTTGGGAAGCTGCCAAATGGGTAGCCAAAGTACGTGATAGCACTTGTTCAAGTTGTTCCAGTGGGGTCATCCTGAAGACGAATATGAATGGAGGCCATTTTGGTGAAGGAGGCCGTCATGGTCACTGTGAGGAAACAGCGTATGAATATGCTTTTCTAATGAAAGTTATGGGGATTTCATGCGATACCACATGA 2211 43.01 MTLYDKKILGKRKPSPFSAPRDAPPVPKKVPFTVSAHGTSWQDPYHWMSNTADPDLSAYLRHENSYAEAFMADTLNLQRTLFSEMNSRMPTNISTPTERWGPWLYYQYIPEGKEYPVLCRKLATQTNGWAKSFLNNVIGEFGREKVLLDWNEIAEEYGYVHVGTCRVSPDHNFLAYTLDITGSERFMLQIKDLHSGCILPDLRVDGVVSLAWAQDGCTLFYTTTDENQRPYRVQLQRMVFVINATNPEEGLRRMNKRVPGVQYFLEHHHGFFYILTNAPLTDKELSVGDYYLARCQVDDVQLANWQNIILPGEDISIQDMDIFHGHLVLFLNSKGCSMICSINMPIDVNYKQQMEIGDLSPWFFPLPSGLCKVVPCSNHDFMNFVYRVVVSSPVMPDMIIDYDMRQRVFSIVQQEEVLGVFGNSGSFSQTHDLNTNKLLDAQNGENKHAQITEVQRWKDFSDAYCCERKEVISHDGVEVPLTILYSREAWKKGLSPGLLQGYGAYGEVLDKAWCSDRLSLLDRGWVVAFADVRGGGGPDSSWHKCGSGLNKLNSIYDFVLCGKYLVNEGYVHEDQLGAIGFSAGGLLVGAAINMCPDMFRAAILKVPFLDICNTLLDPNLPLTLLDYEEFGNPRVQSQFESILSYSPYDNISQGSCHPSVLVTASFYDSRVGVWEAAKWVAKVRDSTCSSCSSGVILKTNMNGGHFGEGGRHGHCEETAYEYAFLMKVMGISCDTT* 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15443312 15464415 + Vvi1g992 Vvi1g992 770192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g992 736 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 24 231 IPR023302 GO:0004252
Vvi1g992 736 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 236 407 IPR023302 GO:0004252
Vvi1g992 736 SUPERFAMILY Peptidase/esterase 'gauge' domain 20 419 - -
Vvi1g992 736 Gene3D - 98 237 - -
Vvi1g992 736 MobiDBLite consensus disorder prediction 9 28 - -
Vvi1g992 736 Gene3D alpha/beta hydrolase 23 97 IPR029058 -
Vvi1g992 736 PANTHER PROLYL OLIGOPEPTIDASE FAMILY PROTEIN 18 237 - -
Vvi1g992 736 PANTHER PROLYL OLIGOPEPTIDASE FAMILY PROTEIN 239 732 - -
Vvi1g992 736 SUPERFAMILY alpha/beta-Hydrolases 466 725 IPR029058 -
Vvi1g992 736 Gene3D - 238 416 - -
Vvi1g992 736 Pfam Prolyl oligopeptidase family 516 730 IPR001375 GO:0006508|GO:0008236
Vvi1g992 736 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 496 514 IPR002470 GO:0004252|GO:0006508
Vvi1g992 736 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 522 546 IPR002470 GO:0004252|GO:0006508
Vvi1g992 736 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 550 569 IPR002470 GO:0004252|GO:0006508
Vvi1g992 736 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 580 600 IPR002470 GO:0004252|GO:0006508
Vvi1g992 736 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 638 653 IPR002470 GO:0004252|GO:0006508
Vvi1g992 736 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 657 679 IPR002470 GO:0004252|GO:0006508
Vvi1g992 736 Gene3D alpha/beta hydrolase 424 733 IPR029058 -
Vvi1g992 736 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 18 237 - -
Vvi1g992 736 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 239 732 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g992 - - - vvi:100258143 1469.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g992 . . . . . . Bma14g01669 . Cmo04g01649 . . . Car04g01626 . . . Cpe01g01398 Bhi07g01448 . . . . . . . . . . . . . . . . . . Csa05g02531 Chy10g01075 Cme10g01398 . Blo11g00797 Bda07g01492 . Bpe11g01659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007009 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 1 1 37