Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g995 ATGGCACCCAAACCCCACCGCTTCCCCCAAGTTGCAGATACTGTATTGCAAAGCCCACCGAAGCGGGCCAGGACAATGGCCACTGAATCTTCCATCAAAGATGCTTTCGCCAATTACACTGACTACCTCAATCTACTTAATGAAAAACGGGAAAGGGTGGTAAAAGCAAGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAGAATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCTTGCATCTGTGACTGAGCAGCATGTATCCCGACTTGTAAAAGAACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGGGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGGACTCTTTTGATTCTTGATGAGATAAATGCTACTCTGTTACCTCTCAGTGATCCATCTCATCAACCTTTGCAGATTAATATCCTTGACTATCTATTGGGGCTTGCAGACTTGACCGGAGAACTGATGAGGTTGGCAATTGGTCGAATATCAGATGGTGAACTTGAATATGCAGAGAAGATATGCGGGTTTGTTCGAGATATCTATAGGGAGCTGACCCTGCTTGCCCCACATATGGATGACAATACAGATATGAAGACAAAGATGGATACAATGCTACAAAGCGTTATGAAAATAGAAAATGCTTGCTTTAGTGTCCATGTGAGGGGATCAGAGTATGTTCAACTGCCCGGATCCAGTGATCCCAGTTACCTTTTATTGGGGATGCCTGACCACGAAATATGA 813 42.8 MAPKPHRFPQVADTVLQSPPKRARTMATESSIKDAFANYTDYLNLLNEKRERVVKASRDITINSKKVIFQVHRISKNNKDEVLDKAVKDLASVTEQHVSRLVKELQGTDFWKLRRAYSPGVQEYVEAATLCNFCKNGTLLILDEINATLLPLSDPSHQPLQINILDYLLGLADLTGELMRLAIGRISDGELEYAEKICGFVRDIYRELTLLAPHMDDNTDMKTKMDTMLQSVMKIENACFSVHVRGSEYVQLPGSSDPSYLLLGMPDHEI* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15551006 15556266 + Vvi1g995 Vvi1g995 770195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g995 270 Gene3D Translin; domain 1 26 157 IPR016068 GO:0043565
Vvi1g995 270 PANTHER TRANSLIN-ASSOCIATED PROTEIN X 11 267 - -
Vvi1g995 270 Pfam Translin family 49 246 IPR002848 GO:0043565
Vvi1g995 270 PANTHER TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X 11 267 IPR002848 GO:0043565
Vvi1g995 270 SUPERFAMILY Translin 31 248 IPR036081 GO:0043565
Vvi1g995 270 Gene3D Translin; domain 2 167 252 IPR016069 GO:0043565
Vvi1g995 270 CDD TRAX 36 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g995 - - - vvi:100242747 532.717
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g995 Blo01g00463 . Bda01g02117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02305 Bma01g00133 . . . . . . . . . Cpe07g00096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008533 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 35