Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g996 ATGGCGATTACTGCTTCCGTGTCCTTTCTTTCCCCTTCCCCCTCCCGTCTTTTCTGCCTGCAAAACCATAATCCTCTCTCTCAACCATTATTCTCTCTTCCATTTCACTCTCACGCCTTCCTCACCTTTGCTTCCCCTCAAAAACGCCTCAAACCCACTGCCATTCCCAAGAACATAACACCAAGCGCACAAGCTTCCAATGACTCTGCGCCAATGCTTCCTCCTTACAACGTTTTAATCACTGGTTCCACAAAAGGAATAGGTTTTGCACTAGCTAGGGAGTTTCTTAAAGCAGGTGATAATGTCATAATTTCCTCAAGATCAGCTGAACGGGTGGAATCTTCTGTTGAGAGCTTAAGAAGGGAATTTGGGAAGCACCATGTGTGGGGCACTACATGTGATGTTAGAAAAGGAGAGGATGTGAAGGATTTAGTTGCATTTGCACAAGAAAACCTGAAATACATCGATATATGGATTAATAATGCAGGATCAAATGCATATAGTTACAAACCACTGGCAGAAGCTTCAGATGAAGATCTTATTGAAGTTGTTACCACTAACACCCTTGGTTTGATGATTTGCTGTCGAGAGGCAATAAAGATGATGTTGAACCAGCCTCAAGGGGGTCATATTTTCAACATTGATGGGGCTGGTTCAGATGGAAGACCAACCCCCAGATTTGCGGCATATGGTGCGACAAAACGCAGTGTGGTTCATTTAACAAAATCATTACAGGCTGAATTGCAAATGCAAGATGTTAAAAACGTGGTAGTACATAATCTTTCGCCAGGAATGGTCACCACTGATCTTCTCATGTCGGGTGCCACTACAAAACAGGCCAAGTTTTTCATTAATGTTTTGGCAGAACCAGCAGAAGTGGTTGCAGAATACCTTGTTCCAAACATCAGATCTATCCCTGTCAATGGATCAACAAAGCCTACTTATATTCGTTTCCTCACCGGGTTGAAAGCCTATTCACAGATATTCTCAAGATTCGCATTTGGTGCAAGAAGAAACAGATATCTTCTTGAAGATTGA 1038 42.68 MAITASVSFLSPSPSRLFCLQNHNPLSQPLFSLPFHSHAFLTFASPQKRLKPTAIPKNITPSAQASNDSAPMLPPYNVLITGSTKGIGFALAREFLKAGDNVIISSRSAERVESSVESLRREFGKHHVWGTTCDVRKGEDVKDLVAFAQENLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMLNQPQGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVPNIRSIPVNGSTKPTYIRFLTGLKAYSQIFSRFAFGARRNRYLLED* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15586830 15619187 - Vvi1g996 Vvi1g996 770196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g996 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 297 IPR036291 -
Vvi1g996 345 Gene3D - 76 312 - -
Vvi1g996 345 Pfam short chain dehydrogenase 78 273 IPR002347 -
Vvi1g996 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 164 IPR002347 -
Vvi1g996 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 217 IPR002347 -
Vvi1g996 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 230 249 IPR002347 -
Vvi1g996 345 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 38 345 - -
Vvi1g996 345 PRINTS Glucose/ribitol dehydrogenase family signature 77 94 IPR002347 -
Vvi1g996 345 PRINTS Glucose/ribitol dehydrogenase family signature 153 164 IPR002347 -
Vvi1g996 345 PRINTS Glucose/ribitol dehydrogenase family signature 203 219 IPR002347 -
Vvi1g996 345 PRINTS Glucose/ribitol dehydrogenase family signature 230 249 IPR002347 -
Vvi1g996 345 PRINTS Glucose/ribitol dehydrogenase family signature 254 271 IPR002347 -
Vvi1g996 345 PANTHER CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTIC 38 345 - -
Vvi1g996 345 CDD SDR_c 78 311 - -
Vvi1g996 345 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 217 245 IPR020904 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g996 K13606 NOL, NYC1; chlorophyll(ide) b reductase [EC:1.1.1.294] - vvi:100265035 675.241
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g996 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .