Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1randomg2 ATGACTAAAAACGATGAAACGTCACTATCATCATCGGCATCAGCATCGAGAGCTTCTGCTCCTCTACGGCCTACTATAACGCTGCCCCCTCGTTCCTCCATGGAAACTCTCTTTCCTGGAGGTCCCGGCTTCAGTCCCGGTCCCATGACTCTCGTCTCTAATTTTTTCTCCGACAACGACCCCGACTCCGACTGCCGCTCCTTCTCTCAGCTGCTCGCCGGCGCTATGGCCTCGCCCGCAGCTTTTCCCGGCCCCAGGCCCAGTTTTTCCACCGACCCTCAGGTCTCCGCTTCTTCCAAGGAAGACAGGACTTCCGTTGATGCCGCTGGTGATTTTGAATTTCGGTTCAAGCAGAACCGGCCCTCCGGTTTGGTGATTGCTCAGTCCCCGTTGTTTACAGTTCCTCCCGGGTTAAGCCCGACCTGTTTGCTCGATTCCCCAGGTTTCTTTTCGCAGGGACCATTTGTAATGTCCCATCAGCAGGCCTTAGCTCAGGTTACCGCTCAGGCTGCACAAGCCCATTCCCATATGCAACTCCAAGCCAAATTTCCGTCTTCTTTATCACAGATGCCACCCTTAGTATCAGATACTAGAACTGCTGTGAAGGAATCATCTGGTTTATCTCAATCTGATCAGAGATCCCAACCTTCTTCATTTACAGTTGATAAGCCTGCTGATGATGGCTACAATTGGCGGAAATATGGGCAGAAGCAAGTGAAGGGAAGTGAATATCCTCGAAGCTATTACAAATGTACACATCCAAGTTGTCCTGTTAAAAAAAAGGTTGAACGTTCTCTTGATGGCCAAGTAACAGAGATTATTTATAAGGGCCAGCACAACCATCAAGCACCACTACCCAACAAGCAATCTAGTCAAGCCATACCTGAACACTTACCTGGATCAAGTGACAGTGAGGAAATGGATGATGCTGAGACTAGAGGTGATGAAAAGGGTGAAGATGAACCTGACCCCAAAAGAAGGAATACAGAGGTCAGGGTTTCAGATCAGGTTTCCTCCCATAGAACAGTCACAGAACCTAGGATTATTGTGCAGACAACCAGTGAAGTTGATCTCTTGGATGATGGCTATAGGTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAATCCTTATCCAAGGAGCTACTATAAATGCACAAATCCAGGATGCAATGTCCGTAAGCATGTTGAGAGGGCAGCAACAGACCCGAAAGCCGTCATAACAACATATGAAGGTAAACATAATCATGATGTGCCAGCAGCTAAAAGTAGTAGCCACAACACAGCCAACAGCATTGCATCACAATAA 1308 48.09 MTKNDETSLSSSASASRASAPLRPTITLPPRSSMETLFPGGPGFSPGPMTLVSNFFSDNDPDSDCRSFSQLLAGAMASPAAFPGPRPSFSTDPQVSASSKEDRTSVDAAGDFEFRFKQNRPSGLVIAQSPLFTVPPGLSPTCLLDSPGFFSQGPFVMSHQQALAQVTAQAAQAHSHMQLQAKFPSSLSQMPPLVSDTRTAVKESSGLSQSDQRSQPSSFTVDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSLDGQVTEIIYKGQHNHQAPLPNKQSSQAIPEHLPGSSDSEEMDDAETRGDEKGEDEPDPKRRNTEVRVSDQVSSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTNPGCNVRKHVERAATDPKAVITTYEGKHNHDVPAAKSSSHNTANSIASQ* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 414 435 - -
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 89 103 - -
Vvi1randomg2 435 ProSiteProfiles WRKY domain profile. 354 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 183 237 - -
Vvi1randomg2 435 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 Pfam WRKY DNA -binding domain 360 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 SUPERFAMILY WRKY DNA-binding domain 223 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 1 43 - -
Vvi1randomg2 435 SMART WRKY_cls 359 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 SMART WRKY_cls 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 282 298 - -
Vvi1randomg2 435 Gene3D WRKY domain 213 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 Gene3D WRKY domain 344 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 79 103 - -
Vvi1randomg2 435 ProSiteProfiles WRKY domain profile. 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 279 344 - -
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 317 334 - -
Vvi1randomg2 435 SUPERFAMILY WRKY DNA-binding domain 351 419 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 183 221 - -
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 421 435 - -
Vvi1randomg2 435 MobiDBLite consensus disorder prediction 1 21 - -
Vvi1randomg2 435 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 291 IPR044810 GO:0003700
Vvi1randomg2 435 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 289 434 IPR044810 GO:0003700
Vvi1randomg2 435 PANTHER OS12G0507300 PROTEIN 17 291 - -
Vvi1randomg2 435 PANTHER OS12G0507300 PROTEIN 289 434 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14559 PF03106 WRKY 1.10E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1randomg2 - - vvi:100233123 794.653