Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1 ATGGCACTTGAGATTGAAGAACATCCTGTTGAGTCACTCTCCTCAGGCCCCAAGCTATGTGTTAAAAATTTTGTTTGGTCAGAACACGAATGGCCATTGATAAATCACGATGACTTTGCTGATGGAGACGATATTCCAACGATAAGTTTGGAGGGAAATTTGAGTGGGAAGCCATGCCAAGACTATGACAAGGTGTGCCAAGTCATGGTGACTGCTTGTGAGAAGTGGGGGTTCTTCAAGTTGGTGGATCATGGGGTTGCTATAGAAACTGTGGAAAATGTGAAAGTTCAGTTGAATGAGCTTTTTGATCTTCCAATGGATCAGAAGCTGAAAGGGGCTCGATCCACAAGCTTGCCATTGGGGTATTGTGCCTCAAATCCTGAGTATGGACAAAATCTACCATGGGCAGAGATCTTACAATTGCTTCAATCACCACAACAGGTTGTTGCCTTTGCAAGAAAGGTGTTTGGTGATCAACATCAGCCATTTAGCAATGCAATGGTGAAGTACATGCAAGCATTGGACAAATTAGGAATGAAGATTTTTGAAATGTTGGCACATGGAATGGGGCTTCCTGATGACTTCTTTACAAAGAATTTTGAAGAGAAAGAGGCCACCATGATCAGGGTGAACAGATACCCTCCTTGTCCCCTACCTGAGAAATGTCTAGGGGTTGGGAGTCATTCAGACCCCCATACCCTAACAATATTGCTACAAGACGACGTGGGCGGTCTTCAGGTTTTGAAGAGTGACAACCAGTGGATCGGAATTCGTCCTGTCCCAAATTCATTTGTCATCAACATTGGCGACACCCTCGAAGCATGGACTAATGGGAGACTAAGGAGTGTAGTGCATAGAGCAGTGGTGAATAAGGAGAAGCACAGGCTATCAGTGGCATATTTCCTCAGCCCCGCAACCTCTGCCATCATAGATTGCCCTCCTCAGCTGATAGAGTCAAGCACCAACCTCAGAAAGTATGTGAGTTTCACTTGGGGAGAATTCAGAAAGGAGCTTTTGACACAAAAGAGGGTTGTGGGTAAAACTGCCCTCAACAGATATCTCATATCTCCTTGA 1074 44.88 MALEIEEHPVESLSSGPKLCVKNFVWSEHEWPLINHDDFADGDDIPTISLEGNLSGKPCQDYDKVCQVMVTACEKWGFFKLVDHGVAIETVENVKVQLNELFDLPMDQKLKGARSTSLPLGYCASNPEYGQNLPWAEILQLLQSPQQVVAFARKVFGDQHQPFSNAMVKYMQALDKLGMKIFEMLAHGMGLPDDFFTKNFEEKEATMIRVNRYPPCPLPEKCLGVGSHSDPHTLTILLQDDVGGLQVLKSDNQWIGIRPVPNSFVINIGDTLEAWTNGRLRSVVHRAVVNKEKHRLSVAYFLSPATSAIIDCPPQLIESSTNLRKYVSFTWGEFRKELLTQKRVVGKTALNRYLISP* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12464 13764 - Vvi2g1 Vvi2g1 782700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1 357 PANTHER GIBBERELLIN 20 OXIDASE 3-LIKE 14 349 - -
Vvi2g1 357 Gene3D - 11 345 IPR027443 -
Vvi2g1 357 Pfam 2OG-Fe(II) oxygenase superfamily 208 304 IPR044861 -
Vvi2g1 357 Pfam non-haem dioxygenase in morphine synthesis N-terminal 45 144 IPR026992 -
Vvi2g1 357 SUPERFAMILY Clavaminate synthase-like 21 341 - -
Vvi2g1 357 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 204 304 IPR005123 -
Vvi2g1 357 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1 - - - vvi:100854724 736.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g1 Vvi16g711 ECH
Vvi2g1 Vvi15g864 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1