Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g105 ATGTCAAGTGCATGGGAGGATGTGGGATACTCATCTTTCCCTGAATTTTTAGCTCAAAAACAATCTAGTCATGATCACAATGAAGTCAGGGAACAAGTTACAAATTGTGAAAATAGAGCTGTTTCAGGTGATACATTATCTCCTGGTGGGATCCGGACAAAGATTCTATCTAAATCTGGGTTTTCGGAGTTTTTTATTAAAAATTCATTGAAGGGTAAAGGTGTCATATGTAGAGGCCCAGCACGTGATGGCTTTGGTGTTGAGATTAGAGACTCAAATATTACAAAGGCTGCTGTAGCTTCTGATTTGTCACTGAGCTCAAGCGCAAAAACTGCTGTACCATCTGCCCATGGTAGTGCTGGGACTGGGCCTTGTCATGGCCCCCTTCCTGATTCTTCTCATGATGGAGTCAATTTGAGGGAATGGTTGAGAGCTGGGCACCGTAAAATAAATAAAGTTGAGAGCTTGTATATATTTAGGCAGATTGTGGATCTGGTGGATGTTTCGCACTCCCAAGGTGTTGCAATGCAGAACTTACGACCATCTTGTTTTAAGTTGTTGCCATCAAATCAGGTTGCATACCTTGGATCTTCTGTCCAAAGAGAAATGCTAGAGAATGCTGTGGATCAGGATGTTTCCTTGAAGAATCTCCTGAGTGGAAAAAGGTCATTAGAAAAAGGTATGTTTCCCTCGATTAGTTTAAGTGGAAAGAAGCAAAATGATCGGTTAGAAGAGAAGTGGTATACTAGTCCAATGGAGCTCAGTGAGGGGGTCTGCACATTTTCATCTAATATCTACTGTCTGGGTGTTCTTTTGTTCGAGCTACTTGGATCTTTTGATTCTGAAAAAGCACGTGCTGCAGCAGTGTCAGATCTACGTCACAGAATTCTTCCCCCCAACTTTCTGTCAGAAAATCCCAAGGAAGCAGGTTTCTGTCTTTGGCTACTTCATCCTGAATCCTCATCACGTCCGACAACCAGAGAAATCCTACAATCTGAAGTAATTAGTGGACTTCAAGAGGTACATGAAGGTGACTTATCTTCATCTATTGAGCAAGAAGATGTTGATTCAGAACTCTTACTGCATTTTCTTATATTAATGAAAGAGCAAAAGCACAAACATGCCACCAAGTTAGTGGAAGACATTAGGTGCTTAGAAGCAGATATTGAAGAGGTTGAGAGGAGGACCTCTCCTAAAAAATCTTCGCTCCTTTCTTGCTCACATAAAACTGCAATATGTGCAAGTGAAAAAAGGTTGATGAGGAATATCAGTCAACTTGAAAGTGCCTACTTCTCCATGAGATCCAAAATCCAGCTTCCTGAAACTGATGCTTTAACACAAGACCTGAAAGTCACTGATCGCCTGGGAACCTTCTTCAATGGGTTGTGCAAGTATGCTCGTTATAGTAAGTTTGAAGTTCGTGGGATATTAAGAAATGGTGATTTCATCAATTCTGCAAATGTAATTTGCTCTTTGAGTTTTGACCGGGATGAGGACTATTTGGCTGCTGCTGGGGTATCAAAGAAAATAAAGATATTTGAGTTTCATGCTCTCTTTAATGATTCTGTTGACATTCATTACCCGGTAATTGAGATGACCAACAAATCAAAGCTTAGCTGCATTTGCTGGAACAACTACATCAAGAATTATCTGGCTTCAACTGACTATGATGGTGTAGTTAAGTTATGGGATGCGAGTACTGGTCAAGGCCTTTCTCAATACATTGATCACCAAAAAAGGGCTTGGTCTGTTGACTTCTCTCGAGTGGATCCCAAAAAATTAGCCAGTGGAAGTGATGATTGTTCCGTAAAACTGTGGAGCATTAATGAGAAAAACTGTTTAGGCACGATAAGGAACATTGCAAATGTCTGCTGCGTTCAGTTCTCTGCTCACTCGTCTCATTTGCTAGCCTTCGGGTCTGCGGATTACAAAACCTACTGCTATGATCTGCGGAATGCTAAAAGCCCCTGGTGTATATTGGCCGGCCATGACAAAGCTGTGAGCTATGTGAAATTCTTGGATGCTGAAACCCTCGTTTCTGCATCCACTGACAATTCTCTAAAGATTTGGGATCTCAACCAAACCAGTTCTACTGGTTTGTCCATGAATGCTTGCAGCTTAACCCTCAGTGGGCATACTAATGAGAAGAACTTTGTGGGTCTGTCTGTTGCGGATGGATATGTCACATGTGGTTCAGAAACCAATGAGGTTTATGCTTACCACCGATCTCTGCCCATGCCAATCACCTCTCACAAGTTTGGATCCATAGACCCTATTTCTGGAAAAGAGACTGATGATGACAACGGACAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAGTCAAACATGGTTGTTGCTGCCAATTCCACTGGATGTATAAAAGTATTGGAGATGGTTTAA 2400 41.71 MSSAWEDVGYSSFPEFLAQKQSSHDHNEVREQVTNCENRAVSGDTLSPGGIRTKILSKSGFSEFFIKNSLKGKGVICRGPARDGFGVEIRDSNITKAAVASDLSLSSSAKTAVPSAHGSAGTGPCHGPLPDSSHDGVNLREWLRAGHRKINKVESLYIFRQIVDLVDVSHSQGVAMQNLRPSCFKLLPSNQVAYLGSSVQREMLENAVDQDVSLKNLLSGKRSLEKGMFPSISLSGKKQNDRLEEKWYTSPMELSEGVCTFSSNIYCLGVLLFELLGSFDSEKARAAAVSDLRHRILPPNFLSENPKEAGFCLWLLHPESSSRPTTREILQSEVISGLQEVHEGDLSSSIEQEDVDSELLLHFLILMKEQKHKHATKLVEDIRCLEADIEEVERRTSPKKSSLLSCSHKTAICASEKRLMRNISQLESAYFSMRSKIQLPETDALTQDLKVTDRLGTFFNGLCKYARYSKFEVRGILRNGDFINSANVICSLSFDRDEDYLAAAGVSKKIKIFEFHALFNDSVDIHYPVIEMTNKSKLSCICWNNYIKNYLASTDYDGVVKLWDASTGQGLSQYIDHQKRAWSVDFSRVDPKKLASGSDDCSVKLWSINEKNCLGTIRNIANVCCVQFSAHSSHLLAFGSADYKTYCYDLRNAKSPWCILAGHDKAVSYVKFLDAETLVSASTDNSLKIWDLNQTSSTGLSMNACSLTLSGHTNEKNFVGLSVADGYVTCGSETNEVYAYHRSLPMPITSHKFGSIDPISGKETDDDNGQFVSSVCWRGKSNMVVAANSTGCIKVLEMV* 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1066669 1090707 - Vvi2g105 Vvi2g105 782804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g105 799 ProSiteProfiles Protein kinase domain profile. 2 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g105 799 Coils Coil 375 395 - -
Vvi2g105 799 PANTHER PROTEIN SPA1-RELATED 2 20 240 IPR044630 GO:0009640
Vvi2g105 799 PANTHER PROTEIN SPA1-RELATED 2 239 799 IPR044630 GO:0009640
Vvi2g105 799 ProSitePatterns Trp-Asp (WD) repeats signature. 678 692 IPR019775 -
Vvi2g105 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 616 IPR001680 GO:0005515
Vvi2g105 799 MobiDBLite consensus disorder prediction 112 131 - -
Vvi2g105 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 573 IPR001680 GO:0005515
Vvi2g105 799 PRINTS G protein beta WD-40 repeat signature 594 608 IPR020472 -
Vvi2g105 799 PRINTS G protein beta WD-40 repeat signature 551 565 IPR020472 -
Vvi2g105 799 PRINTS G protein beta WD-40 repeat signature 678 692 IPR020472 -
Vvi2g105 799 SUPERFAMILY WD40 repeat-like 487 796 IPR036322 GO:0005515
Vvi2g105 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 700 IPR001680 GO:0005515
Vvi2g105 799 Gene3D Transferase(Phosphotransferase) domain 1 135 345 - -
Vvi2g105 799 SMART WD40_4 610 649 IPR001680 GO:0005515
Vvi2g105 799 SMART WD40_4 758 797 IPR001680 GO:0005515
Vvi2g105 799 SMART WD40_4 702 741 IPR001680 GO:0005515
Vvi2g105 799 SMART WD40_4 567 607 IPR001680 GO:0005515
Vvi2g105 799 SMART WD40_4 653 691 IPR001680 GO:0005515
Vvi2g105 799 SMART WD40_4 525 564 IPR001680 GO:0005515
Vvi2g105 799 SMART WD40_4 479 514 IPR001680 GO:0005515
Vvi2g105 799 PANTHER PROTEIN SPA1-RELATED 2 20 240 - -
Vvi2g105 799 PANTHER PROTEIN SPA1-RELATED 2 239 799 - -
Vvi2g105 799 Pfam WD domain, G-beta repeat 659 691 IPR001680 GO:0005515
Vvi2g105 799 Pfam WD domain, G-beta repeat 570 607 IPR001680 GO:0005515
Vvi2g105 799 Gene3D - 458 799 IPR015943 GO:0005515
Vvi2g105 799 SUPERFAMILY Protein kinase-like (PK-like) 136 339 IPR011009 -
Vvi2g105 799 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 693 - -
Vvi2g105 799 ProSitePatterns Trp-Asp (WD) repeats signature. 551 565 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g105 K16240 SPA1; protein suppressor of PHYA-105 1 - vvi:100257085 1106.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g105 Vvi15g760 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39