Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g107 ATGGAGAGAGCGCGGGGAATTTTTGAGCGGTTCGTGCAGTGTCACCCGAAGGTCGGGGCATGGATTCGCTATGCCAAATTTGAGATGAAGAATGGAGAGGTTGCGAGGGCAAGGAATTGTTACGAGAGGGCCATTGAGAAGTTGGCCGATGATGAGGATGCTGAACAATTGTTCCTTGCATTTGCGGAATTTGAAGAGCGGTGTAAGGAATCCGAGCGTGCTAGGTGCATTTACAAGTTCGCTCTTGACCACATACCAAAAGGTAGGGCGGAGGACTTGTACAGAAAGTTTGTGGCATTTGAAAAGCAATATGGTGACAAGGAGGGAATAGAGGATGCAATCGTGGGGAAGAGGAGGTTTCAGTATGAAGAGGAGGTTAGGAAGAATCCACTCAATTACGACTCATGGTTTGATTATATTAGATTGGAGGAGAATACAGGGAACAAAGCCAGGACTAGAGAAGTTTATGAGCGGGCTATCGCTAATGTTCCTCCTGCTGAGGAGAAGCGATACTGGCAGCGCTACATTTACTTGTGGATTAATTATGCTTTATACGAAGAGCTTGAGGCAGAAGATGCGGAGCGGACACGAGATGTATATAGGGAGTGTCTTAAGCTGATTCCTCACGACAAATTCTCATTTGCTAAAATATGGCTTATGGCTGGCCAGTTTGAAATACGACAATTAAATCTCAAGGGTGCCCGTCAAATCCTGGGGAATGCAATTGGAAAGGCTCCAAAAGATAAGATTTTCAAGAAATACATTGAGATCGAGTTGCAACTCGGCAATATAGATCGTTGTCGGAAGTTATATGAGAAATATTTGGAGTGGTCCCCTGAGAACTGCTATGCTTGGAGCAAGTATGCTGAATTGGAGAAGTCTTTGTCTGAAACAGAGCGAGCTAGAGCTATCTTTGAGCTTGCAATTGCTCAACCTGCATTGGATATGCCAGAGTTATTGTGGAAGGCATATATTGACTTTGAGATATCAGAGGGAGAATTCGAAAGGACCAGGGAGCTCTATGAGAGGCTTCTAGATCGAACAAAGCACTTGAAAGTGTGGATTAGTTATGCAAAATTCGAGGCATCTGCTATGGTGGAGGATGACATGGGTTCAGACTTACCAGAAGATGATGCCCAGGAATCTATTCTAGAAGAAAAAAGGCAATGCATTGAACGAGCTAGAAGGGTTTTTGAGAAAGCCGTTAACTATTTTAGAACATCTGCACCTGAACTGAAAGAGGAAAGGACCATGCTTCTGGAAGAGTGGTTGAACATGGAAAGTAGCTTTGGTGAGCTTGGTGATGTCAGTTTGGTCCAGATAAAGTTGCCCAAGAAACTCAAGAAGAAGAGGCAAATAGTAACGGAGGATGGTCCATCTGGTTACGAGGAGTATATAGACTACCTGTTCCCTGAGGAAACCCAGACCACAAATCTCAAGATTTTGGAAGCAGCATACAGGTGGAAGAAGCAAAAAACTTCTGATGACGAATAG 1494 44.18 MERARGIFERFVQCHPKVGAWIRYAKFEMKNGEVARARNCYERAIEKLADDEDAEQLFLAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEEEVRKNPLNYDSWFDYIRLEENTGNKARTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELEAEDAERTRDVYRECLKLIPHDKFSFAKIWLMAGQFEIRQLNLKGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELEKSLSETERARAIFELAIAQPALDMPELLWKAYIDFEISEGEFERTRELYERLLDRTKHLKVWISYAKFEASAMVEDDMGSDLPEDDAQESILEEKRQCIERARRVFEKAVNYFRTSAPELKEERTMLLEEWLNMESSFGELGDVSLVQIKLPKKLKKKRQIVTEDGPSGYEEYIDYLFPEETQTTNLKILEAAYRWKKQKTSDDE* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1105168 1112931 + Vvi2g107 Vvi2g107 782806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g107 497 PANTHER - 1 494 - -
Vvi2g107 497 Pfam Tetratricopeptide repeat 259 281 IPR019734 GO:0005515
Vvi2g107 497 SMART hat_new_1 296 330 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 1 30 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 147 181 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 113 145 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 389 429 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 191 227 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 32 67 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 69 103 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 229 260 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 332 363 IPR003107 GO:0006396
Vvi2g107 497 SMART hat_new_1 262 294 IPR003107 GO:0006396
Vvi2g107 497 SUPERFAMILY TPR-like 76 316 IPR011990 GO:0005515
Vvi2g107 497 SUPERFAMILY TPR-like 319 363 IPR011990 GO:0005515
Vvi2g107 497 Gene3D Tetratricopeptide repeat domain 116 316 IPR011990 GO:0005515
Vvi2g107 497 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Vvi2g107 497 Gene3D Tetratricopeptide repeat domain 317 408 IPR011990 GO:0005515
Vvi2g107 497 SUPERFAMILY TPR-like 2 87 IPR011990 GO:0005515
Vvi2g107 497 Pfam HAT (Half-A-TPR) repeat 2 28 IPR003107 GO:0006396
Vvi2g107 497 PANTHER PRE-MRNA SPLICING FACTOR 1 494 IPR045075 GO:0000398
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g107 K12869 CRN, CRNKL1, CLF1, SYF3; crooked neck - vvi:100255371 985.326
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003407 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 2 1 2 1 2 3 1 3 5 1 45