Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g108 ATGAGGAAGCATCAATGGAGAGAATCCATAAAGTCTTTTTTTGGAAATCACATCGATCCTGTAAAGGATGAACAACTGAAGGGAAATAAAACAGAGATTGACGATAAAGTGAAAACGTTATTGGAGCTTATAAAAGAGGAAGGTTTAGATGAAAAGGATGGGAACGGAGATGGAAACTTGAAAAGACAACCACTTATTGAACTAATTGAGGATTTCCATAGAAATTATCAATCTCTCTATGACCGATATGATAATCTCACTGAGATACTAAGGAAAAAAATTCATGGCAAACCGGAGAAAGATACTTCATCTACCACTAGCTCAGACTCAGACTCAGATCATTCAACAAAGGAAAGGAGTGATAAAAATGGAAAAGCTTTTAGCAAAAACCCAGAAACAGAGGAAATTATCATGCATTGGAAATCTGAAGTTGAAAGGTTGGATGGTGAAAAAACTGAACTTTTGGTTGAGAATGGAAATCTGAAGCAAAAACTGGACAATGCTAGTAATGTAGAAGCTGAACTGAACCAGAGACTGGAAGATTTAAATCGGGAGAGAGAGAATTTAATCATGGAAAAAGAGACTGCTATCAAAAGGATTGAAGTGGGAGAGGAAATTGCTGAAGAATTGAAGTCGACGGGTGATAAGTTGAAAGATGAGAAACTAGTCCTCGAGCAAGAACTGGAAGCTGTGAAAGGAGAAATTTCCAATCTGGAGCAGCTATTGGAATCCACAAGGCAGGAAATGAGCAGTTTAAGTCACACTCATAGAGCTATTGAGGAAGAAAAAGATTCTCTAGCCTTGAAAATTTTGGAGATTTCAAATGAGTTTAAGCAGGCGGAGAATGCAATGCAAGAACTCATGGCTGAGTCAAGTCAGCTAAAGGTGAAACTGGGTGACAAAGAAAGTGAACTTTCAAATCTCATGAAGAAGCATGAGGGTCATGAGAATGAAGCATCAGCTCGAATAAAGGGTTTAGAGGCTCAGGTAACAGGCTTGGAACTGGAGCTGAGTTCCCTAAGCACCCAGAGAGGAGAAATGGAAAAGCTGATTGAGAGTACAGCAACTGAAGCCAAACAGCTGGCGGAGGAAAATTTAGGACTGAAAGCCCAGATTTCACAGCTTGAAACGATATCAAAAGAGAGAGAAGAAGAACTTGCTGGTCTCTTGAAGAAATTTAAGGATGATGAGAATGAGTCATTGTCTAAAATAGCTGATTTGACAGCACAGATCAACAATCTGCAGCTGGAGATGGATTCTTTGCAAGCTCAGAAAGGTGAATTGGAAGAACAGCTGAGACGCAGGGGCGATGAAGCATCAGATCAGATCAAGGACTTGATGGGCCAGGTCAGTGAAACGAAACAGGAATTGGAATCTCTACACAGCCAGAAAACAGAAAAGGAATTGCTACTCGAGAAAAGAACTCAAGAAAATTCAGGGTTCCTGATTCAGATAGGAAATCTGAAAGAGGAGCTAGCGAACAAGACTGTGGATCAGCAGAGAATGCTGGAAGAGAAGGAGAGTTTGGTAGCAAAGGTGAAGGACCTGGAATTGGAGATGGACTCCATCCAGAACCACAAAAGCGAACTCGAGGAGCAGCTAAGCAGTAAACACCATGAGTACAATAAGTTGAGTGAGGAAAAGGAGGGTCTGCATGTTAGGAGTTTTGACTTAGAGAAAACATTAACAGACAGAGGGAATGAGTTATCTGCTCTCCAGAAGAAACTTGAGGATGGGGCGAGTGAAGCAACTGCTCAAATTCTGGCCTTAACAACACAACTGTCTGCTCTACAACAGGAGCTGCATTCCTTGCAGAATGAGAAAAGCCAATTGGAGTTAGAGATCCAAAGACATAAAGAAGAATCTTCGGAAAGCCTGACGGAATTGGAGAATCAGAGGATGGAGTTAACCAGCAAGGTTGAAGAACATCAGAGAATGCTAAGAGAACAGGAAGATGCATTCAACAAGTTAATGGAGGAGTACAAACAATCTGAAGGTTTGTTTCACGAGTTCAAGAATAACCTGCAAGTCACAGAAAGGAGGTTGGAAGAAATGGAGGAAGAGTCCCGCATTCACCTTGAATCCAAAGCCCACATAATTGCTGATTTTGAAACCATGGTTGAAGACCTGAAAAGAGACCTAGAAGTCAAAGGAGATGAACTCAGTACTTTGGTGGAGGAGGTCCGCAATATCGAAGTTAAGCTCCGCTTATCAAACCAGAAGCTCCATATCTCAGAGACAGTAAACAATACCTTAGCTGGACTTGAATCCACAGTTGGGAAATTTGAGGAAGACTCCATAAACTTCAAGAACCGCATCTCTGAAATAGCAGGCGAAGTTCAGGTTGCAAGGAACTGGGTGAAGATGGCCAAAAGTGAGAAAGAACAACTGAAGAGTGAGGCAAGTAACCTAGTGGAACAACTAAAATATAAAAAACGGAAGGAAGAAGGTGAGAAGGAGAGCCTGATAAAAGCTGTGAGCCAACTTGAGAAGAAGAAGAGGGAAGCCATAAGGCAGCTATGCATCTGGATCGATTATCACCGTGAACGCTGTGATTACCTAAGGGAAATGCTAGCAAAGATGAATATCAGAAGCCAGAGAACTTAG 2607 41.5 MRKHQWRESIKSFFGNHIDPVKDEQLKGNKTEIDDKVKTLLELIKEEGLDEKDGNGDGNLKRQPLIELIEDFHRNYQSLYDRYDNLTEILRKKIHGKPEKDTSSTTSSDSDSDHSTKERSDKNGKAFSKNPETEEIIMHWKSEVERLDGEKTELLVENGNLKQKLDNASNVEAELNQRLEDLNRERENLIMEKETAIKRIEVGEEIAEELKSTGDKLKDEKLVLEQELEAVKGEISNLEQLLESTRQEMSSLSHTHRAIEEEKDSLALKILEISNEFKQAENAMQELMAESSQLKVKLGDKESELSNLMKKHEGHENEASARIKGLEAQVTGLELELSSLSTQRGEMEKLIESTATEAKQLAEENLGLKAQISQLETISKEREEELAGLLKKFKDDENESLSKIADLTAQINNLQLEMDSLQAQKGELEEQLRRRGDEASDQIKDLMGQVSETKQELESLHSQKTEKELLLEKRTQENSGFLIQIGNLKEELANKTVDQQRMLEEKESLVAKVKDLELEMDSIQNHKSELEEQLSSKHHEYNKLSEEKEGLHVRSFDLEKTLTDRGNELSALQKKLEDGASEATAQILALTTQLSALQQELHSLQNEKSQLELEIQRHKEESSESLTELENQRMELTSKVEEHQRMLREQEDAFNKLMEEYKQSEGLFHEFKNNLQVTERRLEEMEEESRIHLESKAHIIADFETMVEDLKRDLEVKGDELSTLVEEVRNIEVKLRLSNQKLHISETVNNTLAGLESTVGKFEEDSINFKNRISEIAGEVQVARNWVKMAKSEKEQLKSEASNLVEQLKYKKRKEEGEKESLIKAVSQLEKKKREAIRQLCIWIDYHRERCDYLREMLAKMNIRSQRT* 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1128685 1137285 + Vvi2g108 Vvi2g108 782807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g108 868 MobiDBLite consensus disorder prediction 96 134 - -
Vvi2g108 868 Pfam KIP1-like protein 14 84 IPR011684 GO:0003779
Vvi2g108 868 Coils Coil 397 463 - -
Vvi2g108 868 Coils Coil 207 378 - -
Vvi2g108 868 Gene3D - 173 334 - -
Vvi2g108 868 Coils Coil 144 199 - -
Vvi2g108 868 PANTHER COP1-INTERACTIVE PROTEIN 1 744 867 - -
Vvi2g108 868 PANTHER COP1-INTERACTIVE PROTEIN 1 125 747 - -
Vvi2g108 868 PANTHER COP1-INTERACTIVE PROTEIN 1 1 125 - -
Vvi2g108 868 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Vvi2g108 868 Coils Coil 787 839 - -
Vvi2g108 868 Coils Coil 499 547 - -
Vvi2g108 868 Coils Coil 707 727 - -
Vvi2g108 868 Coils Coil 580 695 - -
Vvi2g108 868 PANTHER COP1-INTERACTIVE PROTEIN 1 125 747 - -
Vvi2g108 868 PANTHER COP1-INTERACTIVE PROTEIN 1 1 125 - -
Vvi2g108 868 PANTHER COP1-INTERACTIVE PROTEIN 1 744 867 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g108 - - K20283 vvi:100255355 991.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66