Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g109 ATGGCATCGGAAGATGTGAAGACAAGCGAGGCTGCGGTTTCGAGGATCGTGAATCTGGCCGAAGAAGCGAAGCTCGCGAGGGAAGGAGTGAAGGCGCCGAGTCACGCGCTTCTCAGCGTCTGCAAGTCTCTCGTGGCCGGAGGAGTCGCCGGAGGAGTGTCACGCACTGCTGTTGCTCCATTGGAACGGTTAAAAATTTTGCTTCAGGTCCAAAATCCTCATACTATAAAATATAACGGAACCATCCAGGGCTTGAAATATATATGGAAATCTGAGGGTTTCCGGGGACTATTTAAAGGCAATGGAACCAATTGTGCCCGCATTGTACCAAATTCAGCAGTCAAGTTCTATAGTTATGAGCAAGCATCCAAGGGAATTTTATGGCTTTACCGGCAGCAACCTGGCAATGAAAATGCAGAACTCACTCCTCTTTTACGCCTTGGTGCTGGAGCATGTGCAGGAATCATTGCCATGTCAGCGACCTACCCTATGGACATGGTACGAGGGCGATTAACTGTCCAGACAGAGAAGTCTCCTCGCCAGTATAGAGGAATCTTCCATGCTCTTTCAACAGTCCTCAGGGAAGAAGGTGCCCGGGCTTTGTACAAAGGCTGGCTTCCTTCTGTTATAGGAGTTATACCATACGTGGGTCTCAACTTTGCTGTGTACGAATCCTTAAAAGATTGGTTGATGAAAGCAAAACCATTTGGGTTAGTTGAGGACTCCGAGTTGGGTGTGACGACAAGGCTCGCATGTGGGGCTGCTGCTGGAACCGTTGGCCAGACAGTTGCTTACCCTCTTGATGTCATCCGCCGCAGAATGCAGATGGTGGGCTGGAAAGATGCTGCTTCAGTCGTCACTGGTGATGGTAGGGGCAAGGCACCCCTTGAATACACGGGGATGGTTGATGCGTTCAGGAAAACAGTTCGGCATGAGGGATTTGGGGCCTTGTACAAGGGTTTGGTCCCCAATTCAGTAAAGGTGGTCCCATCCATAGCAATTGCATTTGTGACATACGAGATGGTGAAGGACATTCTTGGAGTTGAGATGAGGATTTCTGACTGA 1065 49.67 MASEDVKTSEAAVSRIVNLAEEAKLAREGVKAPSHALLSVCKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHTIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIVPNSAVKFYSYEQASKGILWLYRQQPGNENAELTPLLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKSPRQYRGIFHALSTVLREEGARALYKGWLPSVIGVIPYVGLNFAVYESLKDWLMKAKPFGLVEDSELGVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVTGDGRGKAPLEYTGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEMRISD* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1137553 1144610 - Vvi2g109 Vvi2g109 782808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g109 354 PANTHER BNAA09G39370D PROTEIN 1 349 - -
Vvi2g109 354 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Vvi2g109 354 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Vvi2g109 354 PRINTS Mitochondrial carrier protein signature 100 120 IPR002067 GO:0055085
Vvi2g109 354 PRINTS Mitochondrial carrier protein signature 156 174 IPR002067 GO:0055085
Vvi2g109 354 PRINTS Mitochondrial carrier protein signature 202 220 IPR002067 GO:0055085
Vvi2g109 354 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
Vvi2g109 354 Pfam Mitochondrial carrier protein 39 124 IPR018108 -
Vvi2g109 354 Pfam Mitochondrial carrier protein 243 346 IPR018108 -
Vvi2g109 354 Pfam Mitochondrial carrier protein 142 233 IPR018108 -
Vvi2g109 354 Gene3D Mitochondrial carrier domain 35 348 IPR023395 -
Vvi2g109 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Vvi2g109 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 345 IPR018108 -
Vvi2g109 354 PANTHER SOLUTE CARRIER FAMILY 25 1 349 - -
Vvi2g109 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 141 229 IPR018108 -
Vvi2g109 354 SUPERFAMILY Mitochondrial carrier 38 341 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g109 K14684 SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41 - vvi:100260448 684.871
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g109 Vvi15g759 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0839 Cone9ag0836 . . . . . . . . . . . . . . . Cma06g01029 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003572 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 2 1 2 2 4 2 47