Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g113 ATGTTGAAGATCAAGGAGGAAGAGCTCGAGACAAGGGGTCGAGAGCAGGAGAAGCTTCAGATGGAGTTGAAGAAATTGCAGAAGTTGAAGGAGTTCAAACCCACCGTGACATTTCCACTTCACTCTCTGAGAGATAAAGAACAAGAAAAGAAGGAGAAGAACAAAAAGGGCTGCCCAGAAACGAAAAGGCCATCTCCGTCATATGTACTCTGGTGCAAGGATCAGTGGAATGAGGCCAAGAAAGCAAACCCCGATGCAGACTTCAAGGAGATCTCAAATATTTTGGGGGCTAAATGGAAGACAATCAGCGCAGAAGAGAAGAAGCCATATGAGGAGAAGTATCAGGCTGAGAAGGAAGCCTATTTGCAGATAGTGGGGAAGGAGAAGCGCGAAAATGAAGCCATGAGGCTGTTGGAAGAGGAGCAGAAGCAGAAGACAGCTATGGAGTTGCTTGAGCAATATCTCCAGTTCAAACAGGGAGCAGAAAAGGAGAACAAGAAGAAAAAGAAAGAGAAGGACCCATTGAAACCGAAGCATCCTGTATCAGCATTTTTTTTGTTCTCAAAGGAAAGGCGAGCAGCTCTGCTTGGAGAGGATAAGAATGTTTTAGAGATTGCCAAGATTGCTGGTGAAGAGTGGAAGAACATGACGGAGAAGCAGAAACGCCCTTACGAAGAGATTGCAAAGAAAAATAAGGCAAAGTATCAGGAAGAAATGGAGTTGTACAAACAGCAGAAGGATGAAGAAGCTGAAGATCTCAAGAAGGGAGAGGAGGAGCAGATGAAAATCCAGAAACATGAAGCATTACAACTGCTCAAGAAGAAAGAAAAAACCGAAAATATAATCAAGAAAACCAAGGAGAATCGCCAGAAGAAGAAGAAGCAGAAGGAAAAGGCCAACTCTGATCCAAACAAGCCTAAGAAGCCGGCATCCTCATTCCTCCTATTCAGCAAAGAAGCAAGGAATAGTTTCCTGCAAGAGCGACCAGGAATAAACAATTCCACCCTCAATGCTCTGATTTCAGTGAAATGGAAGGAGTTGGATGAGGAAGAGAGGAAAATCTGGAATGACAAAGCTAAGGAAGCTATGGAAGCATACCAGAAGGAACTAGAGGAATATAACAAGTCTGCTGCAACCATATCTGACAAGCCACAGCAATGA 1161 43.84 MLKIKEEELETRGREQEKLQMELKKLQKLKEFKPTVTFPLHSLRDKEQEKKEKNKKGCPETKRPSPSYVLWCKDQWNEAKKANPDADFKEISNILGAKWKTISAEEKKPYEEKYQAEKEAYLQIVGKEKRENEAMRLLEEEQKQKTAMELLEQYLQFKQGAEKENKKKKKEKDPLKPKHPVSAFFLFSKERRAALLGEDKNVLEIAKIAGEEWKNMTEKQKRPYEEIAKKNKAKYQEEMELYKQQKDEEAEDLKKGEEEQMKIQKHEALQLLKKKEKTENIIKKTKENRQKKKKQKEKANSDPNKPKKPASSFLLFSKEARNSFLQERPGINNSTLNALISVKWKELDEEERKIWNDKAKEAMEAYQKELEEYNKSAATISDKPQQ* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1184187 1187119 + Vvi2g113 Vvi2g113 782812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g113 386 SMART hmgende2 305 375 IPR009071 -
Vvi2g113 386 SMART hmgende2 60 130 IPR009071 -
Vvi2g113 386 SMART hmgende2 176 244 IPR009071 -
Vvi2g113 386 Coils Coil 9 29 - -
Vvi2g113 386 MobiDBLite consensus disorder prediction 37 66 - -
Vvi2g113 386 Gene3D High mobility group box domain 284 383 IPR036910 -
Vvi2g113 386 Gene3D High mobility group box domain 160 257 IPR036910 -
Vvi2g113 386 Coils Coil 268 302 - -
Vvi2g113 386 Gene3D High mobility group box domain 44 126 IPR036910 -
Vvi2g113 386 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 306 374 IPR009071 -
Vvi2g113 386 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 177 243 IPR009071 -
Vvi2g113 386 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 382 - -
Vvi2g113 386 Coils Coil 151 171 - -
Vvi2g113 386 Coils Coil 225 259 - -
Vvi2g113 386 Pfam HMG (high mobility group) box 61 122 IPR009071 -
Vvi2g113 386 Pfam HMG (high mobility group) box 306 374 IPR009071 -
Vvi2g113 386 Pfam HMG (high mobility group) box 177 243 IPR009071 -
Vvi2g113 386 Coils Coil 356 383 - -
Vvi2g113 386 CDD HMGB-UBF_HMG-box 306 371 - -
Vvi2g113 386 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 61 129 IPR009071 -
Vvi2g113 386 MobiDBLite consensus disorder prediction 243 286 - -
Vvi2g113 386 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 382 IPR044601 GO:0003677
Vvi2g113 386 MobiDBLite consensus disorder prediction 243 315 - -
Vvi2g113 386 CDD HMGB-UBF_HMG-box 180 240 - -
Vvi2g113 386 CDD HMGB-UBF_HMG-box 62 121 - -
Vvi2g113 386 SUPERFAMILY HMG-box 298 376 IPR036910 -
Vvi2g113 386 SUPERFAMILY HMG-box 50 123 IPR036910 -
Vvi2g113 386 MobiDBLite consensus disorder prediction 40 60 - -
Vvi2g113 386 SUPERFAMILY HMG-box 164 248 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g113 K09273 UBTF; upstream-binding transcription factor - vvi:100243346 647.506
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g113 . . . Bda08g00480 . . . . . . . . . . . Cpe14g00470 . . . . . . . . . . . . . . . . . Cone6ag0841 Cone9ag0838 . . . Cme07g01578 . . . . . . Bma05g00859 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00644 Chy07g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14560 PF00505 HMG_box 9.80E-17 CL0114 Vvi TR