Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g116 ATGGAGAAATCTCTGGTGACACTCGACAACGGCACCACATGCTCTTCCTGGAACTACAATGGCGAGAGATTGGCAACGGGCTCAGTCGATGGAACACTGGCCATCTTCGATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGGGTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGCGATGCAGTTGGGTGCATTTGTGCTGATGGAACTTTGTCATTGTGGGAGGAGGTTGTAGAAGATGCACAACCCCTTCAATGGAAACTATGCAAAAGTTTTGGAAGTAATTCAAATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATGGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAGGCTGAATTTCAGAATGCTAGTGATTCAGTGTCTACGTTTGGGAAGGCTTTGTGCTTATCTGCATCTGTCTCTTGGAATCCACAAAGAGGTGAAAGTCAGCAATCAAGCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAGGTCTGGGAATTTGATCAGAATCACCAAAGATGGCTTCCAGTTGCTGAGTTGGCTTTGCATGGGGATAAGGGGGATCAGGTCTTCACTGTTGCATGGGCACCTAATATTGGCAGGCCATATGAGGTAATGGCTGTTGCAACTCACAAGGGAATCGCGATATGGCATCTTGGGCTTAACCCTGACATTGATGGAAGGCTCTCAGTGGAGAGGGTTGCCCTGCTTTCTGGTCATGATGGGGAGGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGCATGAACAGGCTGCACTGGAGCCCACTTCTTAG 978 47.85 MEKSLVTLDNGTTCSSWNYNGERLATGSVDGTLAIFDSIDPASSSFTCTSRSRVHEDSVVKVVWVPPEYGDAVGCICADGTLSLWEEVVEDAQPLQWKLCKSFGSNSNKVLDVQFGVSPTSLKMVSAYSDGHVKVYELLDPLELKSWQLQAEFQNASDSVSTFGKALCLSASVSWNPQRGESQQSSFVLGFHSDTPQLNSAKVWEFDQNHQRWLPVAELALHGDKGDQVFTVAWAPNIGRPYEVMAVATHKGIAIWHLGLNPDIDGRLSVERVALLSGHDGEVWQMEWDMSGMTLATTGGDGMVRLWQSNLNGVWHEQAALEPTS* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1211764 1218586 + Vvi2g116 Vvi2g116 782815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g116 325 Gene3D - 3 322 IPR015943 GO:0005515
Vvi2g116 325 SMART WD40_4 96 137 IPR001680 GO:0005515
Vvi2g116 325 SMART WD40_4 212 257 IPR001680 GO:0005515
Vvi2g116 325 SMART WD40_4 1 37 IPR001680 GO:0005515
Vvi2g116 325 SMART WD40_4 45 86 IPR001680 GO:0005515
Vvi2g116 325 SMART WD40_4 269 308 IPR001680 GO:0005515
Vvi2g116 325 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Vvi2g116 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Vvi2g116 325 PANTHER NUCLEOPORIN SEH1 1 324 IPR037597 GO:1904263
Vvi2g116 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Vvi2g116 325 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 1 324 IPR037363 GO:0005198
Vvi2g116 325 SUPERFAMILY WD40 repeat-like 8 315 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g116 K14299 SEH1; nucleoporin SEH1 - vvi:100263869 674.085
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g116 Blo02g01142 . . Bda08g00478 Bpe05g00684 . . . . . . . . . . . . . . . . . . . Cla07g01417 Cam07g1518 Cec07g1614 Cco07g1574 Clacu07g1506 Cmu07g1476 Cre07g1853 Cone8ag0251 Cone12ag0258 . . . . . . . . . . . . Bma05g00861 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00647 Chy07g01163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010676 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32