Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g118 ATGGACACTGGTTTGAAATGGCAGCAGAAGACTCTGGTCAATGAGCTTACTCAAGGGATGGAGCTGGCAAAGCAGTTGAAGATCCATTTGAGTCCATCTTCAATGAGCCAGACCCAAGAATTCTTGGTACATAAGATAGTAGCATCATTTGAGAAGGCTCTTTTGATAGTCAAATGGAGTGGGCCAGTGGAAAACCCTCAGCCAGTGGCACCTTCATCTGCTCCCCAGTCTCCCCTTTCTGTCAATGGAAGTCCCCGGACTGTGAGCGAGGATTTTGACAAGGGTTGTAAGGATCATCATCAGGAACACAAAGATTTCTCAAAGAAGAGAAAGACATTGCCCACATGGACCGATCAAGTGAGAGTCTGCTCTGAGACCGGGCTTGAAGGGCCCCATGATGATGGCTACAACTGGAGAAAATATGGGCAGAAGGACATTCTTGGAGCTAAATACCCCAGAAGCTACTACAGATGCACCTACAGAAACCTCCACGACTGTTGGGCAACAAAGCAAGTTCAGCGTTCGGATGAAGATCCCTCCATGTTCGAGATCACATACCGAGGAAAGCATACTTGCACCCAAGGCAGTCATTCAGTGCCAGCACCAGCATCACCTGAAAAGCAAGAGATAAAACAGAACCACCATAACGACAATAACCATCAGCAACAGCATTACATAGAGAACCCCTTGAACTATTCCTCCATGGCTTCAACATCTTACGGATGCATGAAGAGTGAAACCAGCCTGTTCCCACAGCCTTCAGCTTTCAACAAGGACAACTATGACAACCTCTTGGGCTGTTATTCTCCCACATTTATATCCCCAGCGACGTCCGATTCAAACTGCTTCTCACTGTCTCCATGCCAGATGAGCAACTTTGGAGGGCCTCCCAATCTTCAACATTCAGAATCTGAGCTCACTGAAATTATCTCAGCAGCCAATTCTCCAATTCTGAACTTGGAGTTTCCCCTTGATCAAGTGGACTTTGATCCCAGTTTCCCATTTAATACCCCAGGATTTTTCTCCTAG 1029 46.74 MDTGLKWQQKTLVNELTQGMELAKQLKIHLSPSSMSQTQEFLVHKIVASFEKALLIVKWSGPVENPQPVAPSSAPQSPLSVNGSPRTVSEDFDKGCKDHHQEHKDFSKKRKTLPTWTDQVRVCSETGLEGPHDDGYNWRKYGQKDILGAKYPRSYYRCTYRNLHDCWATKQVQRSDEDPSMFEITYRGKHTCTQGSHSVPAPASPEKQEIKQNHHNDNNHQQQHYIENPLNYSSMASTSYGCMKSETSLFPQPSAFNKDNYDNLLGCYSPTFISPATSDSNCFSLSPCQMSNFGGPPNLQHSESELTEIISAANSPILNLEFPLDQVDFDPSFPFNTPGFFS* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1228313 1229702 - Vvi2g118 Vvi2g118 782817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g118 342 MobiDBLite consensus disorder prediction 67 107 - -
Vvi2g118 342 MobiDBLite consensus disorder prediction 90 107 - -
Vvi2g118 342 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 338 - -
Vvi2g118 342 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g118 342 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 338 IPR044810 GO:0003700
Vvi2g118 342 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g118 342 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g118 342 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g118 342 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g118 Vvi16g867 ECH
Vvi2g118 Vvi15g747 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14561 PF03106 WRKY 2.40E-27 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g118 - - vvi:100253577 707.983