Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g12 ATGGATGTGAGGGAGTTCCCGATTCAAAGTATTTTGTTCAATAAAGCTCTTCTGTTGTTATGTTCAATTTGGAATGAATTCATATGTATGGCAATCAACTTAATGATGTGCCCAAGAGCATCAGAAGAACATGAACCCTTATCATCTCATCATGGAGCGGCCTCTACGCTCTCTACAGGGCTCTTAGTTGATACAAATCTGGGAACATCACCTCCTGACACTTATAGACCACCCCCTGCACCAATTCCATACGATGTGGATTTAGGACATCCTCAAACTCCACCAGTTGCTGAAGAAAGCTGTGTTAACAAGAATGACACTGTAGTGCAAACAACAAATTCTGGATCTCTTGGAGAAGCAGTTGAGGGTAATATGTTAGAAACTTTAGCTAAATGTGAAGACTTAAAGCAGTCAGACTGCAAGATGCTAGCCCAATCTGAACTTACTTCATCAAAAGAAACAGAAGTTGAACTTTCAAAGTCAGGTGATCCAATTGTTTCCTCAACAGACGAGGAGGATGTTTGCCCCACCTGTCTTGAAGAGTATGATGCGGAGAATCCAAAAATTGTCACTAAATGTGAGCATCATTTTCACCTTGCATGCATTCTTGAGTGGATGGAAAGAAGTGACACCTGCCCTGTGTGTGATAAGGAAATGATATTCAACACTGCCACCAATGCGTAG 684 41.52 MDVREFPIQSILFNKALLLLCSIWNEFICMAINLMMCPRASEEHEPLSSHHGAASTLSTGLLVDTNLGTSPPDTYRPPPAPIPYDVDLGHPQTPPVAEESCVNKNDTVVQTTNSGSLGEAVEGNMLETLAKCEDLKQSDCKMLAQSELTSSKETEVELSKSGDPIVSSTDEEDVCPTCLEEYDAENPKIVTKCEHHFHLACILEWMERSDTCPVCDKEMIFNTATNA* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 209925 211742 + Vvi2g12 Vvi2g12 782711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g12 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 224 - -
Vvi2g12 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 222 IPR013083 -
Vvi2g12 227 MobiDBLite consensus disorder prediction 62 84 - -
Vvi2g12 227 Pfam RING-H2 zinc finger domain 168 215 IPR024766 GO:0008270
Vvi2g12 227 SMART ring_2 175 215 IPR001841 -
Vvi2g12 227 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Vvi2g12 227 SUPERFAMILY RING/U-box 170 222 - -
Vvi2g12 227 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 36 224 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g12 - - vvi:100248355 400.593