Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g125 ATGGAGATCGATGGCTGTGAACCCGAAGGCCAAGAAAAGATGAGAGAAAATGCCGTTCCCGATGGATTCAACGCTAATTATCTCAAAGTCTACTATGGAAAGCTTTTTCCACACTCGGATTTGTTTAAGTGGATGTCTTATGGAAATGATGGGAAGCATCCTGCCTGCGATCAGTCCTACATTGGCCGAAGAGAATTTTCTTTCACATTGGCTGATGACATTTACTTGCGGTTCCAGTCTTTCAACAGCGTCCACGAAATGGAAAATTCCATCAAAGAAAAATGCCCATTCAAAATAGATATTGGGCCCGTGTATAGTGTGGATCCTACTAAGAGGCATGCATATGCACAATCCGGTGACAATGTTTTTACTCCAGTTGAGAGGGAGCTAGTTTTTGATATTGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATACTGCCCTCAGAGATGATTTTGGGTTTAATCACATTCTTTGGGTGTATAGTGGTCGACGTGGTGTCCATTGCTGGGTTTGTGATGGAAGAGCAAGAAGGTTGTCCAATGAACAGAGGGCTGCTATTGCTGATTATTTCCGGGTCTACAAGGGCAATGAAAATAGTCAGAAAAAGGTTTCTTTAGTAGGTCCTGCTCTCCACCCTTTCCTTGCGCGTTCATATACTGAAGTTTTGAAGGATTTCTTTGAGGAGAAGTTACTCCCTGGTCAAAAGTTATTTTCAACTGAAGAGAGATATGAGAAGATCCTAAAAATAATTCCTGATGAATCTATTACTTCTGAGCTTCGGGGAAAGTGGCAGGAGAACAGGCGGTCCTCCATTTCAAAAGAAGATATTAATGCCATTCGTTGGGAGCAACTAAAACATATGCTGCAATCTGGAAAGCAGAAGGCACAAGGTCTTCGCAGGTGTGTTGAAGAGATTGTGTTCTCTTATACCTACCCTAGGCTTGATATGGAGGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAGGTCGTGTGTGTGTTCCTATTGACCCTAAAAGTTGTGAGGAATTTGATCCTACCAGTGTACCAACCCTTTCCAAGCTTTTGGAAGAACTTAACATGGGAGGTTTTAGAGCAGATGCAGATGATGAATGGGAGAGAACCTCACTTGGAAAATCAGTCAAGTTTTTCAGATTATCATTCTTGCAGCCTTTACTGAAGTCCTGCAAGGAGGAGATTGAAAGTGCTTACAACGCCAAGCTTCAGCTCTCAAAGAATTCTCTGAGTTGGTAG 1344 42.11 MEIDGCEPEGQEKMRENAVPDGFNANYLKVYYGKLFPHSDLFKWMSYGNDGKHPACDQSYIGRREFSFTLADDIYLRFQSFNSVHEMENSIKEKCPFKIDIGPVYSVDPTKRHAYAQSGDNVFTPVERELVFDIDITDYDDVRYCCSGADVCLDCWPLMTVAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGRARRLSNEQRAAIADYFRVYKGNENSQKKVSLVGPALHPFLARSYTEVLKDFFEEKLLPGQKLFSTEERYEKILKIIPDESITSELRGKWQENRRSSISKEDINAIRWEQLKHMLQSGKQKAQGLRRCVEEIVFSYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPKSCEEFDPTSVPTLSKLLEELNMGGFRADADDEWERTSLGKSVKFFRLSFLQPLLKSCKEEIESAYNAKLQLSKNSLSW* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1267447 1273671 + Vvi2g125 Vvi2g125 782824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g125 447 Coils Coil 423 443 - -
Vvi2g125 447 Gene3D DNA primase, PRIM domain 15 428 - -
Vvi2g125 447 PANTHER DNA PRIMASE 34 447 - -
Vvi2g125 447 Pfam DNA primase small subunit 132 367 IPR002755 GO:0003896|GO:0006269
Vvi2g125 447 SUPERFAMILY Prim-pol domain 25 389 - -
Vvi2g125 447 CDD AE_Prim_S 37 376 IPR014052 GO:0003896|GO:0006269
Vvi2g125 447 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 29 386 IPR014052 GO:0003896|GO:0006269
Vvi2g125 447 PANTHER DNA PRIMASE SMALL SUBUNIT 34 447 IPR014052 GO:0003896|GO:0006269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g125 K02684 - vvi:100260326 929.858