Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g126 | ATGGAGAAAATGCAAGAAAACAATCTCCAATTCTCGTTCCAACATGGTGTGGACATCAGATCCTCACTATCACAGCTCCTATTGACAAGTGGCTCCAACACCTTGGATTCGATTTTCTCCCACTGTCCGCCATCAACCTCCGTCACCAACCCAGTTCTGGAGCCACTGGGATCTTCTGTGTATCTCCGGCAGAGAGATCTTCTTCAGAAATTCAGCGAAGAAAGCAGAGCGAGTGGGAGAATTACAAGCAATTCATTGACGAGCTCACTTCATCATTCTCAATTTCTGAATCCATGTAAGAAGAAGCTGTACAGGGGAGTGAGGCAGAGGCATTGGGGGAAGTGGGTGGCTGAGATTAGACTCCCTCAGAACAGAATGCGAGTGTGGTTGGGCACTTTCGACACTGCCGAGGCTGCAGCTTATGCCTACGACCGCGCAGCCTACAAGCTCCGAGGCGAATACGCGCGCTTGAATTTCCCCAACCTGAGGGACGCGAGCAAGCTCGGATTCGGAGACTGCGCCAGATTGAACGCTTTGAAGAGCTCCGTCGATGCCAAAATTCAGGCCATTTGCCAGAAAGTGAAAAGGGAGAGAGCCCATAAGACTACCAAAAGGAAGAGCACTAGTACCGGTGGTGAAGGTGGTGGTGGTGAAAGCACTGGCGGTGCGAAATGCTGTCACCAAGCGTTTCTGAAGATGAGTTCTGGAAAGGTGACAACTCGCGGGCCTCTCTCTCCGCGGACGGCCCGATGTTATATCAATTTATGTAGTAGAAGTATGTTATTTACTAGGTGA | 795 | 50.31 | MEKMQENNLQFSFQHGVDIRSSLSQLLLTSGSNTLDSIFSHCPPSTSVTNPVLEPLGSSVYLRQRDLLQKFSEESRASGRITSNSLTSSLHHSQFLNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTFDTAEAAAYAYDRAAYKLRGEYARLNFPNLRDASKLGFGDCARLNALKSSVDAKIQAICQKVKRERAHKTTKRKSTSTGGEGGGGESTGGAKCCHQAFLKMSSGKVTTRGPLSPRTARCYINLCSRSMLFTR* | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1274104 | 1275209 | - | Vvi2g126 | Vvi2g126 | 782825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g126 | 264 | SUPERFAMILY | DNA-binding domain | 103 | 161 | IPR016177 | GO:0003677 | |
Vvi2g126 | 264 | Gene3D | AP2/ERF domain | 103 | 161 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi2g126 | 264 | PRINTS | Ethylene responsive element binding protein signature | 104 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g126 | 264 | PRINTS | Ethylene responsive element binding protein signature | 126 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g126 | 264 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 1 | 205 | - | - | |
Vvi2g126 | 264 | SMART | rav1_2 | 103 | 166 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g126 | 264 | CDD | AP2 | 102 | 162 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g126 | 264 | ProSiteProfiles | AP2/ERF domain profile. | 103 | 160 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi2g126 | 264 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 205 | - | - | |
Vvi2g126 | 264 | MobiDBLite | consensus disorder prediction | 198 | 220 | - | - | |
Vvi2g126 | 264 | Pfam | AP2 domain | 104 | 153 | IPR001471 | GO:0003700|GO:0006355 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14562 | PF00847 | AP2 | 4.90E-14 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g126 | - | - | vvi:100265543 | 394.815 |