Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g126 ATGGAGAAAATGCAAGAAAACAATCTCCAATTCTCGTTCCAACATGGTGTGGACATCAGATCCTCACTATCACAGCTCCTATTGACAAGTGGCTCCAACACCTTGGATTCGATTTTCTCCCACTGTCCGCCATCAACCTCCGTCACCAACCCAGTTCTGGAGCCACTGGGATCTTCTGTGTATCTCCGGCAGAGAGATCTTCTTCAGAAATTCAGCGAAGAAAGCAGAGCGAGTGGGAGAATTACAAGCAATTCATTGACGAGCTCACTTCATCATTCTCAATTTCTGAATCCATGTAAGAAGAAGCTGTACAGGGGAGTGAGGCAGAGGCATTGGGGGAAGTGGGTGGCTGAGATTAGACTCCCTCAGAACAGAATGCGAGTGTGGTTGGGCACTTTCGACACTGCCGAGGCTGCAGCTTATGCCTACGACCGCGCAGCCTACAAGCTCCGAGGCGAATACGCGCGCTTGAATTTCCCCAACCTGAGGGACGCGAGCAAGCTCGGATTCGGAGACTGCGCCAGATTGAACGCTTTGAAGAGCTCCGTCGATGCCAAAATTCAGGCCATTTGCCAGAAAGTGAAAAGGGAGAGAGCCCATAAGACTACCAAAAGGAAGAGCACTAGTACCGGTGGTGAAGGTGGTGGTGGTGAAAGCACTGGCGGTGCGAAATGCTGTCACCAAGCGTTTCTGAAGATGAGTTCTGGAAAGGTGACAACTCGCGGGCCTCTCTCTCCGCGGACGGCCCGATGTTATATCAATTTATGTAGTAGAAGTATGTTATTTACTAGGTGA 795 50.31 MEKMQENNLQFSFQHGVDIRSSLSQLLLTSGSNTLDSIFSHCPPSTSVTNPVLEPLGSSVYLRQRDLLQKFSEESRASGRITSNSLTSSLHHSQFLNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTFDTAEAAAYAYDRAAYKLRGEYARLNFPNLRDASKLGFGDCARLNALKSSVDAKIQAICQKVKRERAHKTTKRKSTSTGGEGGGGESTGGAKCCHQAFLKMSSGKVTTRGPLSPRTARCYINLCSRSMLFTR* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1274104 1275209 - Vvi2g126 Vvi2g126 782825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g126 264 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Vvi2g126 264 Gene3D AP2/ERF domain 103 161 IPR036955 GO:0003700|GO:0006355
Vvi2g126 264 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Vvi2g126 264 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Vvi2g126 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 205 - -
Vvi2g126 264 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Vvi2g126 264 CDD AP2 102 162 IPR001471 GO:0003700|GO:0006355
Vvi2g126 264 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Vvi2g126 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 205 - -
Vvi2g126 264 MobiDBLite consensus disorder prediction 198 220 - -
Vvi2g126 264 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14562 PF00847 AP2 4.90E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g126 - - vvi:100265543 394.815