Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g129 ATGGACTCGGTAGAGACGATTAAGCCTAGGGTGGATCCTCAGCTGGGGGCAGATGCGTATGTGAAGAAGAGACGTACAGGAATCAAAGAAGAGGCCTCTTTCAGGTCTTCAAAGGGTGTCGAAGAAGAGTCCAAAATGGATGACGGTGCCGTGAAACTGAATTCGGAGCTTTCGACGTCGGGTTCTTCCGCGCCGGAGTCATCTGCGTCGCAGAGCGGTGGGGCATCGGATGGAGAAGTGGTCTCTGAGAGTGAGGAGCAGGGAGGAAAGGAAGGAGAGAAGCGTGTCTCGACGTGTGTCCCACATGGATCAATGTCGGTGATTGGGCGGAGGAGGGCCATGGAAGACGCCCTGACGGTGGCACCGGGAGAGTTCGACTCGTACGATTTCTACGCTGTGTACGACGGTCACGGCGGGGCTAAGGTGGCGTACGCGTGTCGTGATCGTCTGCACAGGTTACTCGCGAAAGAGATCGAGGATGCGATAAATGGCGAAGGACGAATAGATTGGGAGAACGTGATGGTGGCGAGCTTTTCAAAGATGGATGAAGAGATTAATGGCGAAGCCAATCAGGTGGAAGACAGGTCCACTTCTTCCTTGCTCAGGTCGATGGGGTCGACGGCGGTGGTGGTGGTGGTTGGCCCCGAGAAGCTTGTGGTGGCTAATTGCGGCGATTCTAGAGCCGTTCTCTGCCGCCGCGGCGTTGCCGTCCCACTGTCTCGTGATCATAAGCCTGACAGGCCTGATGAAAGGGAGAGAGTGGAAGCAGCAGGAGGGAAAGTGATAAATTGGAATGGTTTTCGTATTCTAGGAGTGCTTTCTACCTCACGATCAATAGGGGATTACTTTCTGAAGCCATATGTGACCCCCAAACCAGAGGTCACAGTTTGGGAGCGAGAAGAGTTTGATGACTTCATTGTAATAGCAAGCGATGGTTTATGGGATGTTATTACAAATGAGCTTGCCTGCAAGATTGTGAGGAAATGCTTTGACGGCCAAATTAGGAGGAGAGTCTCGGAGGGAATGAGTAGAAGTTGTGCAGCAAAGGCTGCAGCAATGCTAACTGAACTGGCAATGGCTCAAGGAAGCAAAGACAATATCAGCGTAGTGGTGGTGGAGCTTAAGAAACATTTGTGCTATGGGGGCCTCAAGCTGAAGAATCCAAACAGCCCAAGCCATTGA 1182 52.37 MDSVETIKPRVDPQLGADAYVKKRRTGIKEEASFRSSKGVEEESKMDDGAVKLNSELSTSGSSAPESSASQSGGASDGEVVSESEEQGGKEGEKRVSTCVPHGSMSVIGRRRAMEDALTVAPGEFDSYDFYAVYDGHGGAKVAYACRDRLHRLLAKEIEDAINGEGRIDWENVMVASFSKMDEEINGEANQVEDRSTSSLLRSMGSTAVVVVVGPEKLVVANCGDSRAVLCRRGVAVPLSRDHKPDRPDERERVEAAGGKVINWNGFRILGVLSTSRSIGDYFLKPYVTPKPEVTVWEREEFDDFIVIASDGLWDVITNELACKIVRKCFDGQIRRRVSEGMSRSCAAKAAAMLTELAMAQGSKDNISVVVVELKKHLCYGGLKLKNPNSPSH* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1336358 1338192 - Vvi2g129 Vvi2g129 782828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g129 393 SMART PP2C_SIG_2 111 374 IPR001932 -
Vvi2g129 393 SMART PP2C_4 87 372 IPR001932 -
Vvi2g129 393 Gene3D - 94 378 IPR036457 -
Vvi2g129 393 SUPERFAMILY PP2C-like 98 375 IPR036457 -
Vvi2g129 393 CDD PP2Cc 102 374 IPR001932 -
Vvi2g129 393 PANTHER ALPHABET, ISOFORM E-RELATED 45 376 - -
Vvi2g129 393 MobiDBLite consensus disorder prediction 30 50 - -
Vvi2g129 393 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 45 376 - -
Vvi2g129 393 Pfam Protein phosphatase 2C 104 367 IPR001932 -
Vvi2g129 393 MobiDBLite consensus disorder prediction 53 78 - -
Vvi2g129 393 MobiDBLite consensus disorder prediction 83 97 - -
Vvi2g129 393 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Vvi2g129 393 ProSiteProfiles PPM-type phosphatase domain profile. 101 374 IPR001932 -
Vvi2g129 393 MobiDBLite consensus disorder prediction 30 103 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g129 Vvi16g883 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g129 K14497 - vvi:100251367 712.605