Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g13 ATGGATGGATGGTCGGTTCCGAGAAATGGGTCTGTCTTGGATTGTGGTGAAACGGGTGGGAGTTGTGAGACTGATGGGATTTGTGTTGACATTGGTAATAATAATTCTCTGAATGGCACTGATAAACTTCAGGTTTTATTCGATCAAGTTTTGTTGATTTTCATGAAGGAGGTTCTTGGGAATGAGTGTGTTAGGCCTATTCCGGCAATGCTTGGCGATGGGCGGTCTGTGGACTTGTTCAAACTTTTCTGGGTTGTGAGGGGGAAGGGGGGTTATGAGTGGGTTTCTGATAAAGGGTTGTGGGGTTTGGTGGCAGAGGAATGTGGGTTGGATGTTGGTGTTAAGACATGCCTAAAATTGATTTACTTCAAGTATTTGGATCAGTTGGATCAGTGGTTACTTGGGATTTTACGGGATGGGAGATTGATATTGGGTGGGACGGGCCCAAAAGAGAAAGATGATGGAGTTTTCGAATTAGAATCTGAGAGAACTGACAACTGCGTTGATTTGGACAAGGAGAAAAGTATTTTGAATCTAAAAAGAGAATCTTTTTCAGGAATGCTGAATTGGGTGAGAGAAATTGCAAAACATCCTGAAGAGCCTTATAAGGGGAATAAGAATGGAAATGAGGTTTTCTCAACCCAGATTTTAAGGGTACGGGAGTCGCTTTTGATAAGGAGGAAGGTCCACACAAAAGAAGAACAATCTCTCCTGCAGAAGCAGAAGATGCACCCCTCCATGTATGAGGATAATATTGTTGTCAATCACCAGTCTACAGAGAAGTCAAGGTGCAGTAGAAGGCTTTTTTCAGTGAAATCTCACTTATGTTCATGTTCAGCTGCTCAAAGTAAATTGCCAGGTCCTCACAGGACAAAGTCAGAGAGTTGCCCCAAAGAGCAAGCATTGACCCCTAATGAGCAAGAGCCTGAGAACACAAATACTTTAGATGACCTGTTTCCAGATGATCTCTTCCTAAAGCCCATTCCTGTGGGCCCCAACTTTCAAGCTGAAGTACCTGAATGGACTGGTGAGGTTACTGAGAGTGACTCCAAATGGCTGGGCACACAGGTATGGCCTTTGGAAAATGGGGAATGCAGTTTCCGTATTGAAAAGGACTGTGTTGGGAGAGGAAAACCAGATTCTTGTGACTGTCGGTTTTCAGGTTCTGTTGAATGTGTCAGATTTCATATTGCTGAGAAGAGGATGAAATTGAAGCTTGACCTGGGCTCATTGTTCTATCATTGGAGATTTGATCGTATGGGTGAAGAAATTTCACTGGCATGGACAACTGAAGAAGAAAAGAGGTTCAAGCATATGATAAGGTTGAATTCCTCATTGCAGAGTCCATCCTTTTGGGATAATGCATTGAGAATCTTTCCTACCAAGACAAGGGAGGCCTTGGTAAGCTATTACTTCAACGTGTTCCTTATCAGGCGCAGAATTTATCAGAACCGAGTGACTCCAAGAAAGATTGACAGTGATGATGATGAATTAGAGTTTGGATCTTTGGGTGGCAGTTTCGGGCATGAAGTGATTAAGGTTCCATGGTCTGAATTCCTGACATGCACCCAGAATGAGCAGTCTACTGAGTTGGATTAA 1599 43.15 MDGWSVPRNGSVLDCGETGGSCETDGICVDIGNNNSLNGTDKLQVLFDQVLLIFMKEVLGNECVRPIPAMLGDGRSVDLFKLFWVVRGKGGYEWVSDKGLWGLVAEECGLDVGVKTCLKLIYFKYLDQLDQWLLGILRDGRLILGGTGPKEKDDGVFELESERTDNCVDLDKEKSILNLKRESFSGMLNWVREIAKHPEEPYKGNKNGNEVFSTQILRVRESLLIRRKVHTKEEQSLLQKQKMHPSMYEDNIVVNHQSTEKSRCSRRLFSVKSHLCSCSAAQSKLPGPHRTKSESCPKEQALTPNEQEPENTNTLDDLFPDDLFLKPIPVGPNFQAEVPEWTGEVTESDSKWLGTQVWPLENGECSFRIEKDCVGRGKPDSCDCRFSGSVECVRFHIAEKRMKLKLDLGSLFYHWRFDRMGEEISLAWTTEEEKRFKHMIRLNSSLQSPSFWDNALRIFPTKTREALVSYYFNVFLIRRRIYQNRVTPRKIDSDDDELEFGSLGGSFGHEVIKVPWSEFLTCTQNEQSTELD* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 213714 224334 + Vvi2g13 Vvi2g13 782712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g13 532 CDD SANT 427 475 IPR001005 -
Vvi2g13 532 ProSiteProfiles ELM2 domain profile. 326 474 IPR000949 -
Vvi2g13 532 Pfam ARID/BRIGHT DNA binding domain 63 128 IPR001606 GO:0003677
Vvi2g13 532 MobiDBLite consensus disorder prediction 281 312 - -
Vvi2g13 532 CDD ARID 47 126 - -
Vvi2g13 532 ProSiteProfiles ARID domain profile. 41 134 IPR001606 GO:0003677
Vvi2g13 532 Gene3D - 32 139 IPR036431 GO:0003677
Vvi2g13 532 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 531 - -
Vvi2g13 532 SUPERFAMILY ARID-like 36 135 IPR036431 GO:0003677
Vvi2g13 532 SMART bright_3 42 135 IPR001606 GO:0003677
Vvi2g13 532 MobiDBLite consensus disorder prediction 297 312 - -
Vvi2g13 532 SMART ELM2_2 328 379 IPR000949 -
Vvi2g13 532 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 531 - -
Vvi2g13 532 SMART ARID_2 38 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g13 - - - vvi:100245040 1040.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14563 PF01388 ARID 9.00E-09 CL0123 Vvi TR