Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g130 ATGGAGAGCGAGGATCTTGGTGGCGAAACCCGATTGGTCTGCCTCTGCATCGAAGCTGCCTCGCAGAGCAGAGACGCCGTTGAGAAATGGCGAAGACAGCGACGAACTCTCCAACGCATGCCCTCTCATCTCGCGGAAGCTCTCCTCCATCGCCTCATTCGCCGCCGAATTCTTAATCCGTCGCTTCTCGAAGTTTTCAAATTTAGTGTAGAGAAGATTGATTTAAGAGGAGAGAGTTCTGTTGATGCGGAATGGATGGCATACATAGGAGGATTTTGCTGCTTGTGCTCATTGAATATTGCAGATTGCCAAAGGATCACTAATTCTGCTTTGTGGCCTATTATAGGGATGCCGAATTTAAAGGAGCTGGACCTTTCCAGATGTATAAAATTCAGTGATTCTGGACTTAGGCATCTCATATCCATCCGGACTTTGCAGAAGTTATGCATTTCAGAAACAGGTGTAACTGCAGATGGGATTAATCTTGTTTCTTCACTTACAAACTTGTCAGTATTGGATTTGGGAGGTTTACCAGTCACTGATTTGGTACTAAGTTCTCTCCAGGTCCTGACAAAACTACAATACCTTGATCTTTGGGGAAGTAAGATATCTAACAAAGGGGCTGCTGATCTTGTGGTGTTCCCCAAGTTGAGCTTCCTGAATATAGCCTGGACGGATGTTACAACGTTGCCGGATTTGCCATCTATTGCATGCCTAAACATGAGCAACTGCACCATTCATTCTATGTTTGAAGGCGAGGGTGCTAAAGCTCTTCTAGAAAAGATTACTGTCTCTGGAGCTACATTTTTAAATGTGTCTGAAGCCTTTTTGTTTATCGAAACAAGTTTCCTATCTTTCTTGGATGTATCCAGGTCTTCTCTTAACAGTTTCTGCTTTTTATCTTGTATGAAAGCACTGGAACATTTGGATCTCAGCTTTACCATGATGGGTGATGATTCAATTCAGTTGATTGCATGTATAGGAGCAAATTTGAGAAATCTGAATCTCAGCAACACAAGAGTTAGCTCTGCTGGAGTGAGCATTTTAGCTGGTTGTGTTCCAAATCTTGAAACTATTTCGTTATCTCACACACCAGTTGATGATGTCGCCATCTCATATATCAGCATGATGTCTTCAGTGAAGATTATTAACTTGAGTAATACAAATGTTAAAGGTTTGATTTGGAGCGACTCTGAGCTAGTTTGGGAGCTCTCACTGGCAGCCCTGCATAGTCTCAATTACGTGAAACGGTTGGATTTGGAGGGCACCCAAGTTGAGGATGAAGCTTTATGCCCTCTGTTAAGGTTCCAACAATTGAACGAATTATCTCTCAAAGGTACTCGCCTTACAGACTTGTCCTTATACCAGTTGTCTTCTCTTCCGAACTTGATAAATCTGAGTATCGGTGACACCGTGTTGACAAATGGTGGACTCAATTCATTCAAACCACCTGCAACACTAAAATTGCTGGACTTAAGAGGCTGTTGGCTCTTAACCGAGGATGCTATATTGTCATTCCATAAGAATGATCCTCAGATTGAAGTTAGGCATGAACTTGTGCATATCACTCCGTCAGAGCAAAATGCCTCTAACCGATCATCTCCATCACAAAAAGGTAAGAAGCAACAGAAGTTACCCAAATCTCAGAGTAGGTCCAAGGAGGAAACCGTCATAGATCAAAGATGGAAGTATAGCAGAGAGGAACTGCTTGCAATGGAGCATTCGACCTTGGCCCTCAATTTTCCTTATAAGATGCATTTGGGTTAA 1767 42.67 MESEDLGGETRLVCLCIEAASQSRDAVEKWRRQRRTLQRMPSHLAEALLHRLIRRRILNPSLLEVFKFSVEKIDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTTLPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALEHLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTRLTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTEDAILSFHKNDPQIEVRHELVHITPSEQNASNRSSPSQKGKKQQKLPKSQSRSKEETVIDQRWKYSREELLAMEHSTLALNFPYKMHLG* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1342880 1348591 + Vvi2g130 Vvi2g130 782829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g130 588 MobiDBLite consensus disorder prediction 524 557 - -
Vvi2g130 588 Gene3D Ribonuclease Inhibitor 157 260 IPR032675 -
Vvi2g130 588 Gene3D Ribonuclease Inhibitor 399 578 IPR032675 -
Vvi2g130 588 PANTHER RECEPTOR-LIKE PROTEIN 14 9 578 - -
Vvi2g130 588 SUPERFAMILY RNI-like 73 515 - -
Vvi2g130 588 SMART LRR_CC_2 353 377 IPR006553 -
Vvi2g130 588 SMART LRR_CC_2 436 460 IPR006553 -
Vvi2g130 588 SMART LRR_CC_2 303 327 IPR006553 -
Vvi2g130 588 SMART LRR_CC_2 117 142 IPR006553 -
Vvi2g130 588 SMART LRR_CC_2 190 214 IPR006553 -
Vvi2g130 588 SMART LRR_CC_2 328 352 IPR006553 -
Vvi2g130 588 SMART LRR_CC_2 484 509 IPR006553 -
Vvi2g130 588 MobiDBLite consensus disorder prediction 524 543 - -
Vvi2g130 588 Gene3D Ribonuclease Inhibitor 15 154 IPR032675 -
Vvi2g130 588 PANTHER F-BOX/LRR-REPEAT PROTEIN 13 9 578 - -
Vvi2g130 588 Gene3D Ribonuclease Inhibitor 261 398 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g130 - - - vvi:100261612 1107.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g130 . . . . . . . Bma14g00633 . . . . . . . . . . . . . . . . Cla07g01424 Cam07g1525 Cec07g1621 Cco07g1581 Clacu07g1513 Cmu07g1483 Cre07g1860 . . . Cone9ag0850 . . . . . . Bda07g00458 . . Bpe11g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00655 Chy07g01156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005843 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 7 1 39