Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g138 ATGCCGCGAAGTTCACGACACAAATCGCACAAGCAGAGCAAGCACAGTTCGAGAGACGTGAGAGAGCGGTCGGACTCGGAGGAAGATGTAAAGACGAAGAACGGGAGAGAGGAGGGTTCAGTTAGGGTTTCAAAGGATTCGTCTTCTGGTGAGAAGAGAAAGCTCGCTTCGCAGTTGAGGGACGGCAAAGATCTGTCTGGTCACGGCAATGGTGAAGCGTCGGAGGAGTATGTCTCTTCTAAGAGACGAAAGGATAGGGTTGACGTGGCCGGCAGTGACAGGTGGGACGGAGGTGATGAGCGAGCCGATGGTTCTGTGGTGGATAAGGGCATGAAGAGTTCACGGATGGATTCGGAGAAAGGTTCCAAATCGAAGGTTTCAATTGATTCCAAAAGTAAAAGTAGTAGAAGGCATGAGAGTGAGAGAAAGGAGGACAATGTGGGTTTGGTAGCTGAGAAAGAGGAGAGTAAGAGTGGTAAGGTTGAAGCAAAGAGGAAGGGGGAGAAGGATTCAAGTCAGAAGGAGGCGAGTCAGTACAAGGATGCGAAAGAGAAGGAGAAGGAGCGTGGCTCGGAGAAGGATAGGAAGGTTCAGGATAGCAAGCGTGATTCAGAGACAAGGGTGCGGGATAGCGAAGTGAAAAGGAAGCGAGAATCTGAATCGGTGGATGTTGGAGTGGAGCGACCAGTGAAAAAGGGAACGGAAAATACTGAGTGGCCTTTACAAGATGAGCTGCGAAATCCTGAGTTAGAGAAAGAACTTGAGAAACGGATTCGAAGAAGAGATGGCTCTAGTGACAAGGATAAATATCAGGATTTAAGAGAAAGTGATGATAGGCGAATGTCTTCAAGGGGTGAGCATGCCAAGGATGAAAGATACAAGGATGAAAGGCTCAAGGATGGGAGTTATGGAGATAAATACCGGGAAGATGTTGACAGAGAAAATAGACACAGGGATGGCAAGCAAAGAGAAGACGCTGACAAGGACAAGAGACATCGGGATGAGAAGTACAGAGATGAATACACCTCAAGAGATCGCACAACTGATAAGTCTGATACTAAGCGCTTGAGGGATGAAAATCATGCTGCAGAAATTCGTCGTAGGAAATCAAGAACTCAAAGTAATAATCATGATGGTAGTCCAATTTATGATGATAGAAGTACCAGATACAAAGATGATAAGGGGAAAAGAAGATCTGATGATAAAGAGGATCATAGTGATACGAGACCCCGAAGCACCAAGGAGCAACGCACTGATGTGGAGAAGAAATCAACAAGTGGTGCTAAAATAGACTCAGGGACTGATAGGGGAAGGTCTCATTCACGCCATGGTGATGTGGACTCTACTTTCGGCCACAACAGGAGAAGGAGTTCTCCCAGCTCCAGCTCTCATGTTGCTAAAGAACAATATAGACATTCAAAGCATGAAGAATCAAGGTACCAGGACTCAGTGCCTGAAGAAAGAGTACGGCATTCTGGAGCACCAGAAAAAGTTTCTGTGTCTCGTTCCATGGAGAAAGCCATTCAAAAGGATGACAGTCGTGTGTTATCAGCTGAAAGACGTCCAAATTCAGATGCCCAGACTTCACCCTTGCAGATGACGGAGAAATCTCCATCATCAACTAGTATTGACCGAAGACGTGTGAATAGAGCAGATGTTAGGCAGAGTCTTGACGTTGAAGAATCAGGACCAAGCAGTGTGTCCAAGGATGCAAAGGATTATTCTGGTGTCGAAGGCAAAGCAAGTGGCCAGTTCCCTATGGAGACACTTTTAGGAGATGATCTTCCCCAAGCAGATGGAGACAATTTCTCTGTTTCTTCTCCTTATGCCAAAAGTATTCACTTGCCTGGCAATTCCAAGAGTCTTCCTCCACCTCCCTTCAGAACTGGAGTTGACAGCTCTGCAGTTTCTGGCCCTTTGGAAGAAGATAGAAGTAAGTCTAATAATCGTTATAAGCGTACTGGTGACACTAACATGGGAAGAATGCAAGTTAATTCTTGGAAAGGTGTTCAAAACTGGCCTTCCCCAGTAGCTAATGGATTTATTCCTTTCCAACATGGTCCACATCCTGTTGGTTTCCATCCCATGATGCAGCAGTTTCCAGCTCCACCTATGTTTGGTGTTAGACCTTCAATGGAATTAAACCATGCTGGGGTTCCTTACCATATTGCTGATGCTGATAGGTTTCCTAGCCATGGGCGTCCATTTGGGTGGAGAAATCCAGTGGATGACTCTTGCCCTCCCTTACATGGGTGGGATCCAAGTAATGGTATCTATGGGGATGAATCCCACATGTATGGGAGACTAGATTGGGACCATAATAGAAACTTGGCAAGTGGTCGTGGGTGGGAGACCAGTGGAGACATGTGGAAGGGGCAAAATGATGGTGTGAGCATGAGCATGGAGTTGCCTTCTGCCCCCCATAAAGATGATAATTCCATGCGTACACCAGCAGATGAAGCTTGGGCTGGTCGGTCTGGTCAGCAGCAGTTTGGGTATGAACAGAACCAACCTGATCTTCAGGTGGCAAACATTGAAACTATTCAGTTGAACACTATCAAGGAAAAGGAGAGATCTAAAGCTCCAGAAACCATCCCTGAGAAAAAACCCAATAATCCTGAGACATCAAAAGACAACCACCATCTTTGGCATGTTTATCTTTCAAAGCTTGATGTGTCAGCAGATCTTACTTATCCTGAATTATATAATCAGTGCACGAGCTTGATGGACAAAGAACAAAGCAAGGCTGTTGATGAAGATGCTTCCAAGGTTTTATATGCAGAGGAGGTTATTGAAGCCAAAATAAAGATTTCGAATGGAAAGTCAAGCACTTCACTTTTTGCTGCCATAAATGATTCTGTTTTTCAGAGAGCCATGTCTCTTTACAAGAAGCAGAGAGAAGAGACGAGAACTATCCTTCTACCCTCAGTGCCAAATGGAGATGAAATTCCATCTACTAATGCAGAGGACACTAAGTACATTCCAACCTCGGATCAGGACATAGCGGTGATGCCAATCCCATCTCCAGATGAAGATAAGCTAGTGGCGCAGGTTTCAACTTGTGACCAGCAACAGGTAGAGGTTATAGCAAGCTCTGATCAGGAGAAAGTGGAGATGTCGATTCCCCCTCAGAAGCTTGAAGTGCCCCTTGAATCCCCTAATGAAAAGGTGAACGAACCAGTTGCAGCAGCTGACAGTCTGGAGATGCTAGAGGAGCCAGTTCCCTCTCCAGACAAGGTGAAAATGGAGGTGGATCCTGAGATATTCGATGAGACTCTTCCAACTTCAGCTCCAATCACCTCAAAAATGGAGGTAGACCCAGAAATCAATCAGGAAACATCCAAGGGTCCAGTTGAAAACCAAGCTGCTACTGACACGGTGGATACCATTGACAAGAAGTTAGTTGACACCAAGTCTGATCCCTTGTTTTTTTCAGATAGGCCTTCTGAGGGTTGTGAGTCAGTGATGCCGGAGTTGATTGATATAAACTTCATCACCAACCAGTCATATCATTGTGTTCATGGGGTCAAAGACTATTCAGGGAATACAAGGAACTCCTTCAGCTTTTCTTCCTTGAATCTCCATCTCTCTCACGTACGATTTTGCTCCCTTGCTATTTACAGTTGTTGTGTTGGAGTTATCATCCGTTTCTTCGCTACAGGTTTGAACCTGCTTCTAGAAGTGAAAGTTAACTTCATGGATGATGGTCTTGGAAAGATAGAGGTTTTCCCCGATCATTTTCATGCTTCGATGCCCATTGCAGAGTCTGTTGAAAAGAAAAATCAATCTTTTTCTCATTCAAGAACTGATAACTCTTTTAGTTCCCATAGTCGCTCGTGGGCTCGAAGAAAATTGAGAAGTGCTGCATCAATGTTGAACTTGTTTAGCCTACGGGGGTTGCCATGGGGATCAAGCAGTGATGATCAGGAAAAGGTTGAGTTAACTGTTGCAGAATTAGAATCTCTTCGAACAGAACTTGCTAGTTTGGAAGAGAGAGAAGCTCACTTTAAAGCTCAGTTGGAACATGTTGATGAAATTTTGCGGTCCGCACGTCTATCTGGCTACTTGTACATTCGAACTAGGTGGGCAGCTTTACCAGGAGAACCTCCTCCCATTGATGATACTGAAGTTGACGACTGGCTTCCCCGCTTTGTTGTGCTTCATGGCTCATGTTTATTCTTCTATATGCTGTCTACAGATTTGAGTCCTCAGGACTCTACCCTACTTTCTGATGTTACTGAAGTCGGTCCTCTGCCAAACTTGACACGAGAAGACAAGGAGATTCGATATTGCTTTTATATCTTAACTTCTCATGGATTGCGATATGAGTGCTCAAGTGTTTCAAAAGTACAGGTGGACTCTTGGCTGACGGCATTAAGACTCGACTGCAAAATCGAACCCGAACCCAAACCCGAACCCGAGAACATAGCCCCTCAATAA 4440 45.14 MPRSSRHKSHKQSKHSSRDVRERSDSEEDVKTKNGREEGSVRVSKDSSSGEKRKLASQLRDGKDLSGHGNGEASEEYVSSKRRKDRVDVAGSDRWDGGDERADGSVVDKGMKSSRMDSEKGSKSKVSIDSKSKSSRRHESERKEDNVGLVAEKEESKSGKVEAKRKGEKDSSQKEASQYKDAKEKEKERGSEKDRKVQDSKRDSETRVRDSEVKRKRESESVDVGVERPVKKGTENTEWPLQDELRNPELEKELEKRIRRRDGSSDKDKYQDLRESDDRRMSSRGEHAKDERYKDERLKDGSYGDKYREDVDRENRHRDGKQREDADKDKRHRDEKYRDEYTSRDRTTDKSDTKRLRDENHAAEIRRRKSRTQSNNHDGSPIYDDRSTRYKDDKGKRRSDDKEDHSDTRPRSTKEQRTDVEKKSTSGAKIDSGTDRGRSHSRHGDVDSTFGHNRRRSSPSSSSHVAKEQYRHSKHEESRYQDSVPEERVRHSGAPEKVSVSRSMEKAIQKDDSRVLSAERRPNSDAQTSPLQMTEKSPSSTSIDRRRVNRADVRQSLDVEESGPSSVSKDAKDYSGVEGKASGQFPMETLLGDDLPQADGDNFSVSSPYAKSIHLPGNSKSLPPPPFRTGVDSSAVSGPLEEDRSKSNNRYKRTGDTNMGRMQVNSWKGVQNWPSPVANGFIPFQHGPHPVGFHPMMQQFPAPPMFGVRPSMELNHAGVPYHIADADRFPSHGRPFGWRNPVDDSCPPLHGWDPSNGIYGDESHMYGRLDWDHNRNLASGRGWETSGDMWKGQNDGVSMSMELPSAPHKDDNSMRTPADEAWAGRSGQQQFGYEQNQPDLQVANIETIQLNTIKEKERSKAPETIPEKKPNNPETSKDNHHLWHVYLSKLDVSADLTYPELYNQCTSLMDKEQSKAVDEDASKVLYAEEVIEAKIKISNGKSSTSLFAAINDSVFQRAMSLYKKQREETRTILLPSVPNGDEIPSTNAEDTKYIPTSDQDIAVMPIPSPDEDKLVAQVSTCDQQQVEVIASSDQEKVEMSIPPQKLEVPLESPNEKVNEPVAAADSLEMLEEPVPSPDKVKMEVDPEIFDETLPTSAPITSKMEVDPEINQETSKGPVENQAATDTVDTIDKKLVDTKSDPLFFSDRPSEGCESVMPELIDINFITNQSYHCVHGVKDYSGNTRNSFSFSSLNLHLSHVRFCSLAIYSCCVGVIIRFFATGLNLLLEVKVNFMDDGLGKIEVFPDHFHASMPIAESVEKKNQSFSHSRTDNSFSSHSRSWARRKLRSAASMLNLFSLRGLPWGSSSDDQEKVELTVAELESLRTELASLEEREAHFKAQLEHVDEILRSARLSGYLYIRTRWAALPGEPPPIDDTEVDDWLPRFVVLHGSCLFFYMLSTDLSPQDSTLLSDVTEVGPLPNLTREDKEIRYCFYILTSHGLRYECSSVSKVQVDSWLTALRLDCKIEPEPKPEPENIAPQ* 1480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1427738 1444597 + Vvi2g138 Vvi2g138 782837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g138 1479 MobiDBLite consensus disorder prediction 540 557 - -
Vvi2g138 1479 CDD PH 1352 1459 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 1 660 - -
Vvi2g138 1479 SUPERFAMILY PH domain-like 1346 1461 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 382 452 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 600 614 - -
Vvi2g138 1479 SMART PH_update 1350 1466 IPR001849 -
Vvi2g138 1479 Coils Coil 1312 1339 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 15 374 - -
Vvi2g138 1479 ProSiteProfiles PH domain profile. 1349 1464 IPR001849 -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 1113 1127 - -
Vvi2g138 1479 PANTHER OS05G0595500 PROTEIN 2 1479 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 1111 1131 - -
Vvi2g138 1479 PANTHER OS05G0595500 PROTEIN 2 1479 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 855 877 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 520 539 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 467 495 - -
Vvi2g138 1479 Coils Coil 169 189 - -
Vvi2g138 1479 MobiDBLite consensus disorder prediction 503 519 - -
Vvi2g138 1479 Gene3D - 1336 1462 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g138 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 - vvi:100265054 2256.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g138 Vvi16g911 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g138 . . . . . . Bma07g01686 . . . . . . . . . Cpe05g00604 . . . . . . . . . . . . . . Cone8ag0242 Cone12ag0246 . Cone9ag0855 . . . . . Blo19g00369 Bda07g01930 Bda09g00013 Bpe08g01521 . . . . Cmo02g01141 Cmo15g01093 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007399 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 0 1 1 1 1 1 1 1 1 5 1 1 36