Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g139 ATGGACGTGATCAAGACACAACAGATATCATCAAGGCCGATTGAGAAGGTAATAGTCCATCCTCTGGTGCTTCTGAGCATTGTTGACAACTACAATCGAGTTGCTAAAGACACTCATAAACGAGTCATTGGAGTTCTACTTGGTAGTTCTTTCAAAGGAACTGTTGATGTGACTAACAGTTATGCAGTGCCCTTTGAAGAAGATGACAAGGACCCAAGTATATGTTTTCTTGACCACAACTACCACGAATCAATGTTTTCCATGTTCAAGAGAATAAATGCCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGAGTATGTCCCCAATCCTGTTTTGGTCATAATTGATGTCCAACCAAAAGAGCTAGGAATTCCCACGAAGGCTTACTATGCTGTTGAGGAGGTGAAAGAGAATGCCACTCAGAAAAGCCAGAAAGTTTTTGTCCACATACCTTCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGGAGTGGAGCACTTGCTAAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACTGAGGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTACGAGAAATACGTGGTTATCTTGATGTTGTGGTTGATGAGAAGCTTCCCCTAAATCATGAGATTCTTTACCATCTACAGGATGTATTCAACTTGCTTCCAAATCTCAATGTAGCCGAGTTAATCAAGGCTTTTGCAGTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCACCCGAAGCGTTATAGCGCTCCACAACTTGATCAATAACAAGATGCTTAACAAAGAACATGAGAAAGCAGAGGATGCAAAGCCAGCAGCCGTCCCAGCCATTGCTGGAAGCTGA 933 42.02 MDVIKTQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTHKRVIGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSICFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHRLFHEYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHIPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTGKLAALKGLDARLREIRGYLDVVVDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFAVKTNDMMLVIYLSSLTRSVIALHNLINNKMLNKEHEKAEDAKPAAVPAIAGS* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1445715 1451555 + Vvi2g139 Vvi2g139 782838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g139 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Vvi2g139 310 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Vvi2g139 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Vvi2g139 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Vvi2g139 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi2g139 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi2g139 310 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 310 - -
Vvi2g139 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g139 K03038 PSMD7, RPN8; 26S proteasome regulatory subunit N8 - vvi:100258173 612.068
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001204 3 2 2 2 3 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 3 2 3 3 1 3 7 4 3 74