Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g14 ATGTCATCCCCAAGCAAACGCAGAGAGATGGATTTGATGAAACTGATGATGAGTGATTATAAGGTGGAGATGGTGAATGATGGCATGCAAGAGTTCTATGTCGATTTCCATGGACCCGGTGACAGTCCTTACCATGGAGGTGTGTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCAACCCATCAGATCCATTGAATGGAGAGGCTGCAGCCCTGATGATGCGAGATCGGCCTGCTTATGAACAAAGAGTGAAAGAGTACTGTGAGAAGTATGCCAAGCCAGAAAACATTGGGGCTGCTCCAGAAGAGAAATCCAGTGATGAAGAGCTGAGCGAAGATAATTATGAATCCAGCGATGAGGCAGTTGCTGGCCAGGCTGATCCTTAG 552 44.75 MSSPSKRREMDLMKLMMSDYKVEMVNDGMQEFYVDFHGPGDSPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEKYAKPENIGAAPEEKSSDEELSEDNYESSDEAVAGQADP* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 236397 241211 + Vvi2g14 Vvi2g14 782713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g14 183 MobiDBLite consensus disorder prediction 150 183 - -
Vvi2g14 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Vvi2g14 183 CDD UBCc 7 143 IPR000608 -
Vvi2g14 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Vvi2g14 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Vvi2g14 183 SMART ubc_7 4 148 - -
Vvi2g14 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Vvi2g14 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Vvi2g14 183 Gene3D Ubiquitin Conjugating Enzyme 1 159 IPR016135 -
Vvi2g14 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g14 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - vvi:100253472 377.481
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g14 Vvi15g843 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127