Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g140 ATGAGCTCTCAGATCTGCAGGTCGGCTTCCAGGGCTGCTAGGTCTCTGCTTTCGGCTTCGAAGAGCTCGAATCTCTTGGCTGAAGGGCGAGCTGTAGCAGCAGTGGCAGCACTTTCATCTAGAGGAAAACCATTTCTATCATCATTTGGGAATGCTGGTTCGGGAAATGCATACAGGGGATGGCTTTCAAGTGTCCTTGCCCTTCCTGCAGCAGCCTACATGATGCAGGAGCAGGAGTTGCATGCAACAGAGATGGAGCGCACTTTCATTGCAATCAAGCCTGATGGAGTCCAGAGAGGGCTGATTGCAGAAATCTTATCACGGTTTGAGCGAAAGGGATTTAAACTCGTGGCTATTAAAATAGTGGTTCCCTCAAAGGACTTTGCCCAGAAGCATTATCATGATCTCAAGGAAAGACCTTTCTTCAATGGTCTGTGCGACTTCCTCAGCTCTGGCCCTGTTGTTGCAATGGTCTGGGAAGGCGAGGGTGTGATAAAATATGGCCGAAAACTAATTGGAGCAACGGATCCACAGAAATCTGAGCCAGGAACTATCAGAGGTGACCTAGCTGTTGTTGTAGGAAGAAATATCATCCATGGGAGCGATGGCCCAGAGACTGCAAAGGATGAAATTAACTTATGGTTTAAACCAGAGGAGTTGGTTAATTACAGTAGCAATGCAGAGAAATGGATCTATGGAGTCAACTGA 708 47.46 MSSQICRSASRAARSLLSASKSSNLLAEGRAVAAVAALSSRGKPFLSSFGNAGSGNAYRGWLSSVLALPAAAYMMQEQELHATEMERTFIAIKPDGVQRGLIAEILSRFERKGFKLVAIKIVVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVNYSSNAEKWIYGVN* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1453846 1458053 + Vvi2g140 Vvi2g140 782839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g140 235 Gene3D - 76 233 IPR036850 -
Vvi2g140 235 CDD NDPk_I 86 215 - -
Vvi2g140 235 ProSitePatterns Nucleoside diphosphate kinases active site. 196 204 IPR023005 -
Vvi2g140 235 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 3 235 - -
Vvi2g140 235 SMART ndk_5 85 222 IPR034907 -
Vvi2g140 235 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 3 235 - -
Vvi2g140 235 Hamap Nucleoside diphosphate kinase [ndk]. 85 220 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vvi2g140 235 Pfam Nucleoside diphosphate kinase 86 219 IPR034907 -
Vvi2g140 235 PRINTS Nucleoside diphosphate kinase signature 132 151 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vvi2g140 235 PRINTS Nucleoside diphosphate kinase signature 173 189 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vvi2g140 235 PRINTS Nucleoside diphosphate kinase signature 152 169 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vvi2g140 235 PRINTS Nucleoside diphosphate kinase signature 196 215 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vvi2g140 235 PRINTS Nucleoside diphosphate kinase signature 88 110 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vvi2g140 235 SUPERFAMILY Nucleoside diphosphate kinase, NDK 84 232 IPR036850 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g140 K00940 ndk, NME; nucleoside-diphosphate kinase [EC:2.7.4.6] - vvi:100263310 422.165
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g140 . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01098 Cam07g1400 Cec07g1260 Cco07g1240 Clacu07g1161 Cmu07g1141 Cre07g1521 . . Cone6ag0854 Cone9ag0856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00662 Chy07g01149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002103 2 2 3 3 3 2 2 2 1 2 2 1 2 2 2 2 2 4 2 1 2 2 3 2 2 2 2 3 2 2 64