Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g146 ATGGAGAATTTGATCTCTTTGGTGAACAAGATACAGAGAGCTTGTACGGCTCTTGGTGACCACGGCGATGAGAGCGCATTGCCGACTCTGTGGGACTCGTTGCCGGCGATCGCGGTGGTCGGAGGCCAGAGCTCAGGAAAGTCTTCAGTGTTGGAGAGCATTGTTGGAAAGGATTTCTTGCCTCGTGGATCTGGGATTGTCACTCGGCGCCCTCTTGTCTTGCAGCTTCATAAGATTGATGAAGGCAGAGAATATGCTGAGTTCCTTCACCTCCCAAGGAGAAGGTTCACTGATTTTGCTGCTGTGAGGAAAGAGATTTCGGATGAAACTGATAGAGAGACTGGTCGCACCAAGCAAATCTCTAGCGTTCCGATTCATCTTAGTATATATTCTCCTAATGTTGTCAACTTGACACTAATTGATCTTCCTGGGCTTACTAAAGTTGCTGTTGAGGGTCAACCTGACAGTATTGTGCAGGATATTGAGAACATGGTTCGCTCATTCATTGAAAAGCCTAACTGTATTATTCTAGCAATATCACCGGCCAATCAAGATCTTGCCACGTCAGATGCCATTAAAATTTCCCGTGAAGTAGATCCTAAAGGGGAGAGGACATTTGGGGTCCTGACAAAGATTGATCTTATGGATAAGGGTACTGATGCAGTTGATATACTGGAAGGAAAATCTTATCGGCTTCAATTTCCTTGGATTGGTGTTGTGAACCGTTCCCAAGCAGATATTAACAAGAGTGTTGACATGATTGCTGCTCGGCGTAGAGAGCGTGAGTATTTTGCTAATACCCCAGAATATAAGCATCTTGCTCACAGAATGGGTTCTGAGCATCTAGGAAAGATGCTTTCAAAGCATCTGGAAAATGTAATCAAGTCAAGGATCCCAAGCATCCAATCCCTTATCAACAAAACAATAGTTGAACTTGAAGCTGAACTGAGTCGCCTTGGAAAGCCTATTGCTGCTGATGCTGGAGGAAAGTTATACATGATCATGGAAATTTCTCGTGTCTTCGATCAGATATACAAAGAGCATCTCGATGGCGTGCGCGCAGGTGGTGATAAAATTTACCATGTCTTTGATAACCAACTTCCTGCTGCTCTGAAAAGGTTGCAATTTGATAAGCAACTCTCAATGGAGAATGTACGAAAGCTCATTACTGAAGCTGATGGATATCAACCCCATTTAATAGCTCCTGAACAAGGATACCGTCGACTCATTGAATCTTCAATAGTTAGCATCAGAGGTCCTGCTGAGGCAGCTGTTGATGCGGTTCACGCCATATTGAAGGAGATGGTTAACAAGGCTATCAGTGAGACTGCAGAATTCAAGCAATACCCTGCTCTCAGAATTGAGGTTGCAAATGCAGCTTGTGATTCACTTGATAGGATGAGGGATGAAAGCAAGAAAGCAACACTTAAGCTAGTCGACATGGAGTGCAGCTACCTGACAGTTGATTTCTTCAGGAAGCTTCCTCAAGATATTGAGAAAGGCGGCAACCCGACGCATTCAATTTTTGATAGATACAATGACTCATATCTTAGGCGAATAGGAACGACAGTTTTGTCTTACGTCAATATGGTGTGTGCCACTCTTCGGAACTCCATTCCAAAGTCCATTGTTTATTGTCAAGTGCGTGAGGCCAAACGCAGCCTACTCGACCATTTCTTTACTGAGTTGGGTAAACTGGAGCCCAAGCAGTTGGCATCATTATTGAACGAGGATCCAGCAGTCATGGCAAGACGCACTGCCCTGGCAAAGAGGCTCGAGTTATACAGAAGCGCTCAAGCTGAAATTGACGCAGTTGCTTGGTCTAAGTAG 1830 44.59 MENLISLVNKIQRACTALGDHGDESALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKIDEGREYAEFLHLPRRRFTDFAAVRKEISDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKIDLMDKGTDAVDILEGKSYRLQFPWIGVVNRSQADINKSVDMIAARRREREYFANTPEYKHLAHRMGSEHLGKMLSKHLENVIKSRIPSIQSLINKTIVELEAELSRLGKPIAADAGGKLYMIMEISRVFDQIYKEHLDGVRAGGDKIYHVFDNQLPAALKRLQFDKQLSMENVRKLITEADGYQPHLIAPEQGYRRLIESSIVSIRGPAEAAVDAVHAILKEMVNKAISETAEFKQYPALRIEVANAACDSLDRMRDESKKATLKLVDMECSYLTVDFFRKLPQDIEKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEPKQLASLLNEDPAVMARRTALAKRLELYRSAQAEIDAVAWSK* 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1509183 1518615 - Vvi2g146 Vvi2g146 782845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g146 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 307 IPR027417 -
Vvi2g146 609 Gene3D - 1 308 IPR027417 -
Vvi2g146 609 CDD DLP_1 33 299 IPR001401 GO:0003924|GO:0005525
Vvi2g146 609 Gene3D Dynamin, middle domain 330 585 - -
Vvi2g146 609 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 299 IPR030381 GO:0005525
Vvi2g146 609 Pfam Dynamin central region 220 487 IPR000375 -
Vvi2g146 609 Pfam Dynamin family 37 212 IPR045063 -
Vvi2g146 609 PANTHER DYNAMIN-RELATED PROTEIN 1B 2 608 - -
Vvi2g146 609 PANTHER DYNAMIN 2 608 IPR022812 -
Vvi2g146 609 PRINTS Dynamin signature 131 148 IPR022812 -
Vvi2g146 609 PRINTS Dynamin signature 200 216 IPR022812 -
Vvi2g146 609 PRINTS Dynamin signature 223 242 IPR022812 -
Vvi2g146 609 PRINTS Dynamin signature 59 76 IPR022812 -
Vvi2g146 609 PRINTS Dynamin signature 34 52 IPR022812 -
Vvi2g146 609 PRINTS Dynamin signature 181 199 IPR022812 -
Vvi2g146 609 SMART dynamin_3 1 250 IPR001401 GO:0003924|GO:0005525
Vvi2g146 609 Pfam Dynamin GTPase effector domain 513 605 IPR003130 GO:0003924|GO:0005525
Vvi2g146 609 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
Vvi2g146 609 ProSiteProfiles GED domain profile. 517 609 IPR020850 -
Vvi2g146 609 SMART GED_2 512 605 IPR003130 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g146 - - - vvi:100256446 1186.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g146 Vvi15g692 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g146 . . Bda06g00152 Bda08g00462 Bpe05g00697 Bpe07g00066 . . . . . . . . . Cpe14g00456 . . . . . . . . Cla07g01094 . Cec07g1258 Cco07g1235 . . Cre07g1519 . . Cone6ag0857 Cone9ag0859 . . . Cme07g01570 . . . . . . Bma05g00879 Bma12g00613 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00667 Chy07g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154