Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g153 ATGGAAGTGGAAGTATTTACAAATGACATGGCTGAGGATGATAGTTATGAAGTAGATGAGGATATTGATGCTTCGGGTTTGGAGGGTGAAAAATGTGGGATATGCATGGATATCATCATTGATAGGGGGGTTTTGGATTGCTGCCAGCACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTACGATCACGAACCTTTGCCCACTTTGCCAGACTGAATTTCAATTGATCACATGTGTTCCAGTTTATGATACTATCGGAACTAGCAAGGTGGATGAAGACTCATTTCCCAGAGACGATGATTGGTCCATTGAAGGGAAGAATAACACTCTCTCGTTTCCATCATACTATATTGATGAAAATGCAGTTATCTGTCTGGATGGTGATGGCTGCAAAATTCGAAGTGGATCTGCAACAATTACAGAAGATTCCAATCTTGATACATCAATTGCTTGCGATTCATGTGATATATGGTATCATGCGTTCTGTGTGGGATTTGATCCTGAAGGCACTTCTGAGGATTCATGGTTATGCCCAAGATGTGCAGTCGCTGGAATGCCAGGAAAATCTGTTGTGTCTGGTTTAGGAGATGGTAATAGTGAATGTTTGCTGGAAGATGGTTTTTCTAGAAAGCTGTCTGTATCTGTTGCTGATGCTGGCGAGACGGCTCTTGTTGTTTCGATGGTCGAAGGAAATCAATGGATGGAAGAATCAAGTGAGGACTTTTTATCAAACCTGGAAGACTGCAATGACTGGAAATTTGAATCTTATTTGATTTCTGATGCTAACTGTTTGGAGTCTCCAACACCATCTGCTGAGAGAGATAACATGCAACCAAACTTGGAAGCACAGGAACTTGAACTTTCTCTATCACGAGACACATCCTTCAGTTTACCTTCTAATTCATCAGTTCTTAATGATTTGAAGACAAACTCTGCCAATAAAATAGTGAATGAACCAAGTGGCTTTGATGGGTTAAGAATTTCTTCAACTAAATTGTTGGATGGATCTTGCTCTGAAAACAAACCATCTGAAAGTGAATCCAGTATAGGGCTTCATCTTGGTTTATCTGTGGGCTCCTTTTTGTCTGTTGAGAGCACGAAAGACAGAGGAACTGATGACGAGAACACAAAAGACACAGGAACTGATGAGGTCGTGGCTGCTGATGTGCACCAGCAACACCCTTCAGAAGAATCTCCATTATCAGGTATGGAAATGGGTGGTCCAAGACATGCTGGGAATGGGAAAGTTAAAGCTGAGATTGGAACTGAAGTTTCTGCAAAGAAAGTTAGAGCTGAAGGGAAGATTCAGATGGCTCCTATAGAGAAGCAAGCTAATGGACAACATGTTTCAGTTGATGCCCAAAAAGGTCACAGTACTGTTGAAGTTTCCACAGGAGATGAGTTAAGACATAATCGGAAAAGAAAGGAAGTCACCTCTGATATAATGAGTATAGTTCAGGGGACAGATCGTAGACCTCTGAAGGGGCTTGCTGAAAAATCCGATGGAGAGAGAGAAAATGCTACTGGCTTGAGAGTGAAAAAGATCATGAAGAGAGCTTCTGAGGACAAGGAATCAGCTGTGCTGGTTCAGAAGTTAAGAAAAGAAATAAGAGAAGCTGTACGAAGCAAATCCTCAATAGAGCTTGGGACAAATCTGTTTGATCCAAAACTTCTCACTGCCTTCAGGGCTGCCATAGCAGGACCCATAACTGAAACCACTGCCAGAAAGTTATCGCCTTCAGCTCTTAAGGTGAAGAAGTCAATGTTGCAGAAGGGAAAAATACGTGAGAATCTGACAAAGAAAATTTATGCAACATCCAAAGGAAAACGTAGGCGAGCATGGGACCGTGACCTTGAAGTCGAATTTTGGAAGCATCGTTGCATGAGAGCTACTAAACCTGAAAAGATTGAGACATTGAAGTCAGTTCTTGACCTCCTAAGAACTTCAGAGTGCATAGATCCAGAGCAAGGGTCTGAATCTCAGACCACAAATCCCATTCTTTCTCGGTTGTATCTGGCAGATACATCTGTTTTCCCACGAAAAGACGATATAAAGCCTTTGGCAGCTCTTAAAGCTAGTGGTAATCCTGAACAAAATAAAGAACATGCTTCAATGGAAAAAGTTTCTAAACCAGCTCTTCATAGTCCTGCTGTCAAAGCTCCAGAAACCTGTAAGATTCCATCAAAGGTTGGTTTTTCCCCCTATGATCATAAAGGGAATAAGAGTAATGCTTCAAGCTTAAAGGATGCTACTGCCCATGGTGTTAAATCTGATGATATAAAGACTGATAAAAGGAAATGGGCCCTAGAGGTTCTTGCAAGAAAAAATGCCGCTGCTAGCAAGAATACGACACAGGAAAAACAGGAGGATAATGCCCTGCTTAAAGGAAATTACCCCTTACTAACTCAACTACCAAGAGATATGAGACCGGTATTGGCACCCAGTCAGCATAATAAAATCCCTGCATCAGTAAGGCAGACTCAGCTTTACCGCCTGACAGAGCACTTCTTGAGGAAAGCAAATCTCCCTGTCATTCGCAGAACAGCAGAGACAGAGCTAGCTGTTGCAGATGCTGTTAATATTGAAAGGGAGGTTGCCAATAGATCAAACAGCAAGCTAGTATATGTGAATCTATGTTCCCAGGAGCTATTACATCGTTCAGATGGCAGCAAATCTAAACCAACTACTAATGAACTTTCTACTGATCCTGAGATTGAAGAAGCTCTGAGAACTGCAGGCCTTTTGTCTGATTCCCCTCCCAACAGCCCACTTCAGGAAATTAAAGATCTTAATGATGAAGATGATCCCTCAAAGGACAACAGAGAGGAAGGACCTGATAATGTATTTGAAATGGATTCTCACCTGGAACTGGATATATATGGTGATTTTGAGTATGATTTGGAAGACGAAGAGTATATTGGTGCTACTGCTCTAAAGGCCTCTAAGGTACAGGAAGAAGGGGAGTCAAAAATGAAAGTGGTGTTCTCCACTCTAAACTCTGATAGATCAAACGATGTTCTGAATTTGGAAGAGCATGTGAAAGTGGGAATTGCTGAAGCACCAAAGAATTCTCCTTCCTCGCTCAAGCATCATACTGATACATGCATCAGAAGCTCAACCATGGAGGGTGGAACAGATCATTCATGTCTTCCTCCAGAATCCTTTCTTGGTGAAGGAGGAAAAGAGCCTTCTCTTGAAGAATGTGAAGAATTATACGGCCCAGACAAAGAACCGCTCATACAAAGGTTTCCAGAAAAGGCCACAGAGCTATATGGACTGTTTCATACTGAAGCTTTAGCCAAGAACACGGTTCCTGGAAAGAATGAAAACTATGGAGAAGATCAAGCAGTAAAAGGTGGAGAGAATTCACCCAATCCTTCTCAAACAGGTGAAAACGGCCGGAAGGAGAAATCTAACACTGACACCAATAAGCAGACTGATAGCAGCAGTTCTGTGCATGGGAAGGTGGAAGCCTATATCAAAGAGCACATCAGGCCCTTGTGCAAGAGTGGCGTGATCACAGTTGAGCAATATAGGTGGGCTGTGGGAAAAACAACTGAAAAAGTTATGAAATACCATGCCAAGGCCAAGAATGCTAATTTCCTAATCAAGGAAGGTGAAAAGGTGAAGAAACTTGCAGAGCAATATGTAGAGGCAGCACAGAAGTAA 3672 42.13 MEVEVFTNDMAEDDSYEVDEDIDASGLEGEKCGICMDIIIDRGVLDCCQHWFCFACIDNWATITNLCPLCQTEFQLITCVPVYDTIGTSKVDEDSFPRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSATITEDSNLDTSIACDSCDIWYHAFCVGFDPEGTSEDSWLCPRCAVAGMPGKSVVSGLGDGNSECLLEDGFSRKLSVSVADAGETALVVSMVEGNQWMEESSEDFLSNLEDCNDWKFESYLISDANCLESPTPSAERDNMQPNLEAQELELSLSRDTSFSLPSNSSVLNDLKTNSANKIVNEPSGFDGLRISSTKLLDGSCSENKPSESESSIGLHLGLSVGSFLSVESTKDRGTDDENTKDTGTDEVVAADVHQQHPSEESPLSGMEMGGPRHAGNGKVKAEIGTEVSAKKVRAEGKIQMAPIEKQANGQHVSVDAQKGHSTVEVSTGDELRHNRKRKEVTSDIMSIVQGTDRRPLKGLAEKSDGERENATGLRVKKIMKRASEDKESAVLVQKLRKEIREAVRSKSSIELGTNLFDPKLLTAFRAAIAGPITETTARKLSPSALKVKKSMLQKGKIRENLTKKIYATSKGKRRRAWDRDLEVEFWKHRCMRATKPEKIETLKSVLDLLRTSECIDPEQGSESQTTNPILSRLYLADTSVFPRKDDIKPLAALKASGNPEQNKEHASMEKVSKPALHSPAVKAPETCKIPSKVGFSPYDHKGNKSNASSLKDATAHGVKSDDIKTDKRKWALEVLARKNAAASKNTTQEKQEDNALLKGNYPLLTQLPRDMRPVLAPSQHNKIPASVRQTQLYRLTEHFLRKANLPVIRRTAETELAVADAVNIEREVANRSNSKLVYVNLCSQELLHRSDGSKSKPTTNELSTDPEIEEALRTAGLLSDSPPNSPLQEIKDLNDEDDPSKDNREEGPDNVFEMDSHLELDIYGDFEYDLEDEEYIGATALKASKVQEEGESKMKVVFSTLNSDRSNDVLNLEEHVKVGIAEAPKNSPSSLKHHTDTCIRSSTMEGGTDHSCLPPESFLGEGGKEPSLEECEELYGPDKEPLIQRFPEKATELYGLFHTEALAKNTVPGKNENYGEDQAVKGGENSPNPSQTGENGRKEKSNTDTNKQTDSSSSVHGKVEAYIKEHIRPLCKSGVITVEQYRWAVGKTTEKVMKYHAKAKNANFLIKEGEKVKKLAEQYVEAAQK* 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1585585 1594666 + Vvi2g153 Vvi2g153 782852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g153 1223 MobiDBLite consensus disorder prediction 365 415 - -
Vvi2g153 1223 Pfam Ring finger domain 31 71 IPR001841 -
Vvi2g153 1223 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Vvi2g153 1223 MobiDBLite consensus disorder prediction 1038 1062 - -
Vvi2g153 1223 SMART ring_2 32 70 IPR001841 -
Vvi2g153 1223 SMART ring_2 122 181 IPR001841 -
Vvi2g153 1223 Pfam PHD-finger 144 182 IPR019787 -
Vvi2g153 1223 ProSiteProfiles Zinc finger RING-type profile. 32 71 IPR001841 -
Vvi2g153 1223 ProSiteProfiles Zinc finger PHD-type profile. 64 184 IPR019787 -
Vvi2g153 1223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 108 IPR013083 -
Vvi2g153 1223 MobiDBLite consensus disorder prediction 928 950 - -
Vvi2g153 1223 MobiDBLite consensus disorder prediction 913 950 - -
Vvi2g153 1223 PANTHER RING FINGER PROTEIN 41, 151 102 1223 - -
Vvi2g153 1223 MobiDBLite consensus disorder prediction 367 385 - -
Vvi2g153 1223 Coils Coil 1207 1223 - -
Vvi2g153 1223 SMART PHD_3 130 182 IPR001965 -
Vvi2g153 1223 MobiDBLite consensus disorder prediction 694 718 - -
Vvi2g153 1223 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Vvi2g153 1223 PANTHER RING/U-BOX PROTEIN 102 1223 - -
Vvi2g153 1223 MobiDBLite consensus disorder prediction 1105 1154 - -
Vvi2g153 1223 SUPERFAMILY RING/U-box 23 77 - -
Vvi2g153 1223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 187 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g153 - - - vvi:100254675 2385.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g153 . . . . . . . . . . Cma02g00926 . Car02g00674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00934 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009633 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14564 PF00628 PHD 2.80E-08 CL0390 Vvi TR