Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g154 | ATGGAAATTGACAGCATTGAATGCGTGTCGTCTACAGATGGGATCTATGAGGAAGAGATCCACCACCACCACCATCAGTTCTCGTCGTCCTCCAAGCCCCATAGCAATGTGGTGTCTCCGGCGATCTCTCCGGCCACCAGCGTCCACGAACTCCTCGAGTGCCCAGTTTGTACTAATTCCATGTACCCTCCAATTCACCAGTGCCACAATGGGCACACGTTGTGTTCCACCTGCAAATCAAGGGTCCACAATCGGTGCCCCACTTGCCGCCAAGAGCTTGGAGATATCAGGTGTCTAGCATTGGAGAAGGTGGCTGAGTCTCTTGAACTTCCTTGTAAATATTGCTCCTTGGGATGCCCAGAAATCTTTCCTTACTACAGTAAACTCAAGCATGAGGCTCAATGTAACTTCAGACCATACAACTGTCCATATGCTGGATCTGAGTGTGCTGTTGTTGGGGATATACCTTTCCTGGTTTCCCATCTTAGGGATGACCACAAGGTAGACATGCACACTGGCTGCACATTCAATCACCGTTATGTCAAGTCTAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTGACAGTCTTTAACTGTTTCGGTCAGTACTTCTGCCTGCATTTTGAAGCATTCCAGCTAGGAATGGCCCCAGTTTACATGGCATTCCTTCGGTTCATGGGTGATGAGATTGAGGCCCGGAACTTCAGTTACAGCCTAGAAGTGGGTGCAAATGGTAGAAAACTAATATGGGAGGGAACCCCACGAAGTATCCGCGACAGCCACAAAAAGGTCAGGGACAGCCACGATGGCCTCATAATCCAGCGCAACATGGCACTTTTTTTCTCTGGTGGGGACAGGAAGGAGCTGAAGCTTCGGGTCACAGGACGAATATGGAAGGAACAACAAAATCCAGATGCAGGGGTGTGCATACCCAATCTTTGTAGTTGA | 951 | 49.21 | MEIDSIECVSSTDGIYEEEIHHHHHQFSSSSKPHSNVVSPAISPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKLKHEAQCNFRPYNCPYAGSECAVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEIEARNFSYSLEVGANGRKLIWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS* | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1595084 | 1600755 | - | Vvi2g154 | Vvi2g154 | 782853 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g154 | 316 | CDD | RING-HC_SIAHs | 52 | 90 | - | - | |
Vvi2g154 | 316 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 307 | - | - | |
Vvi2g154 | 316 | Pfam | Seven in absentia protein family | 96 | 295 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Vvi2g154 | 316 | ProSiteProfiles | Zinc finger RING-type profile. | 54 | 90 | IPR001841 | - | |
Vvi2g154 | 316 | SUPERFAMILY | TRAF domain-like | 107 | 299 | - | - | |
Vvi2g154 | 316 | SUPERFAMILY | RING/U-box | 48 | 94 | - | - | |
Vvi2g154 | 316 | ProSiteProfiles | Zinc finger SIAH-type profile. | 107 | 167 | IPR013010 | GO:0008270 | |
Vvi2g154 | 316 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 307 | - | - | |
Vvi2g154 | 316 | CDD | Sina | 168 | 296 | - | - | |
Vvi2g154 | 316 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 160 | IPR013083 | - | |
Vvi2g154 | 316 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 96 | IPR013083 | - | |
Vvi2g154 | 316 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 161 | 295 | IPR008974 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi2g154 | Vvi15g685 | ECH | |
Vvi2g154 | Vvi15g684 | ECH | |
Vvi2g154 | Vvi15g683 | ECH | |
Vvi2g154 | Vvi16g1041 | ECH |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g154 | K04506 | - | nnu:104604788 | 631.328 |