Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g154 ATGGAAATTGACAGCATTGAATGCGTGTCGTCTACAGATGGGATCTATGAGGAAGAGATCCACCACCACCACCATCAGTTCTCGTCGTCCTCCAAGCCCCATAGCAATGTGGTGTCTCCGGCGATCTCTCCGGCCACCAGCGTCCACGAACTCCTCGAGTGCCCAGTTTGTACTAATTCCATGTACCCTCCAATTCACCAGTGCCACAATGGGCACACGTTGTGTTCCACCTGCAAATCAAGGGTCCACAATCGGTGCCCCACTTGCCGCCAAGAGCTTGGAGATATCAGGTGTCTAGCATTGGAGAAGGTGGCTGAGTCTCTTGAACTTCCTTGTAAATATTGCTCCTTGGGATGCCCAGAAATCTTTCCTTACTACAGTAAACTCAAGCATGAGGCTCAATGTAACTTCAGACCATACAACTGTCCATATGCTGGATCTGAGTGTGCTGTTGTTGGGGATATACCTTTCCTGGTTTCCCATCTTAGGGATGACCACAAGGTAGACATGCACACTGGCTGCACATTCAATCACCGTTATGTCAAGTCTAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTGACAGTCTTTAACTGTTTCGGTCAGTACTTCTGCCTGCATTTTGAAGCATTCCAGCTAGGAATGGCCCCAGTTTACATGGCATTCCTTCGGTTCATGGGTGATGAGATTGAGGCCCGGAACTTCAGTTACAGCCTAGAAGTGGGTGCAAATGGTAGAAAACTAATATGGGAGGGAACCCCACGAAGTATCCGCGACAGCCACAAAAAGGTCAGGGACAGCCACGATGGCCTCATAATCCAGCGCAACATGGCACTTTTTTTCTCTGGTGGGGACAGGAAGGAGCTGAAGCTTCGGGTCACAGGACGAATATGGAAGGAACAACAAAATCCAGATGCAGGGGTGTGCATACCCAATCTTTGTAGTTGA 951 49.21 MEIDSIECVSSTDGIYEEEIHHHHHQFSSSSKPHSNVVSPAISPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKLKHEAQCNFRPYNCPYAGSECAVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEIEARNFSYSLEVGANGRKLIWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1595084 1600755 - Vvi2g154 Vvi2g154 782853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g154 316 CDD RING-HC_SIAHs 52 90 - -
Vvi2g154 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 307 - -
Vvi2g154 316 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi2g154 316 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Vvi2g154 316 SUPERFAMILY TRAF domain-like 107 299 - -
Vvi2g154 316 SUPERFAMILY RING/U-box 48 94 - -
Vvi2g154 316 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Vvi2g154 316 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 307 - -
Vvi2g154 316 CDD Sina 168 296 - -
Vvi2g154 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Vvi2g154 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 96 IPR013083 -
Vvi2g154 316 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 295 IPR008974 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g154 Vvi15g685 ECH
Vvi2g154 Vvi15g684 ECH
Vvi2g154 Vvi15g683 ECH
Vvi2g154 Vvi16g1041 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g154 K04506 - nnu:104604788 631.328