Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g155 ATGAAGAAACCTCGAAATGGCTCCATAAATACAAAATTTTGTGGCAACAGTGAGAATAGGAAGAGCTTCTTCGAACTCTCTTTGTCTCTGATCTTCTCACTGTGGTGCCTTGTGTTCTTGTTCTACTCTAAGCGTGGCCTCAGCCATGGAAATGGAGCAAATTCACATCCTGACAACAGAAGCATGCCTTATTCTACTGTTTGCAATGGTGAACTTTGCAACAGTGCATACTCATATGTTGCAAATGGAAGCAGTAATCATATGAACGGGACACTGCTAGAGTTTAATATTTCTATGCACAGAAATGAATCCGCCATTCCTCGTGACTCTGAAAATCTGGAGTTCTCACTTAAGGAGACAAGTAGCTTAGAGGAATTAGTCTGGAGTATTCTAGGTTACACTGCTTTAGTCTGTGAAGTACAGCTACAGCCACTAGAAGAACAGAAGAAACATATAGCAGAACAAATACCCAGTGAAAGAACTCACTCCACTTATATAAATCTTGATGAGTTTCGAAACACAACAAGGCAGGAAAGAAGCTGGAGCATGCCTAGTCAGCTTGTGAATATTACCCACCACCTTGAGCCTGATGGAACAGAGTATAACTATGCCTCTGTATCGAAAGGTGCAAAGGTGGTGGCTCATAACAAGGAAGCAAAAGGAGCAAGTAACATATTGGGGAAGGATCATGATAAATACCTGAGAAATGCTTGTTCTGTTGGCGAGAAGTTTGTTGTGGTTGAACTTGCTGAGGAAACGTTGGTTGATGCAATCAAAATTGCGAATTTTGAACATTATTCATCAAATGTAAAGGAATTTACGTTGTCTGGTAGTTTAAGTTATCCAACTGAAAAATGGTTCCTACTTGGTAATTTTGTTGCAGCAAATGTCAAGCATGCTCAAAGCTTTAAGTTGCCTGAACCGAAATGGGTTAGAGTAGGCATGACGAAGGATCCAGCGGCCATGCATAAGATTCCTGACCCTGTAGTGGAAGTTAGACAGATGCCAACTGGTAGAATACCTGGTGACACTGTTCTCAAGATCTTGATGCAGAAAGTGAGGTCACTTGAGCTGAACTTGTCTGTGTTGGAGGAGTATATCAAAGAACTGAACCGAAGAGAGGGGAACGTTTTGCCAGAGCTTGATAAAGAGCTATCTAGAATCTCGTTGCTTTTGGAGAAGAGCAGAGCAGAAATAAAGGATCTCTTGGAATGGAAGGAGATTACGGAGAAAGGAATTACGGATCTTGAATCATGGAAAACTGCTGTCTCATCTCAAGTGCAGGAATTGGCCAGAGAAAATGACATGTTAAGGCTGGATGTTAAGAAGGTAGTAACCGAGCAGAGTAGTCTGGAGAACAAAGAACTGGCCGTTGTTGCAGTAAGCTTCTCCATTGCATGTGTAGCAGTTCTGAAGCTGGTTTCAGACCGGGTTTTGACACTTTTTGGGGCGGCTCAGTCCGGCGAGGTTGGCCAGAAAAGTAGAGGTTGGGTTTTGATACTTGTTAGCAGCAGCATGATGATATTCATCACCTTTCTTTGTAGTTAG 1548 42.25 MKKPRNGSINTKFCGNSENRKSFFELSLSLIFSLWCLVFLFYSKRGLSHGNGANSHPDNRSMPYSTVCNGELCNSAYSYVANGSSNHMNGTLLEFNISMHRNESAIPRDSENLEFSLKETSSLEELVWSILGYTALVCEVQLQPLEEQKKHIAEQIPSERTHSTYINLDEFRNTTRQERSWSMPSQLVNITHHLEPDGTEYNYASVSKGAKVVAHNKEAKGASNILGKDHDKYLRNACSVGEKFVVVELAEETLVDAIKIANFEHYSSNVKEFTLSGSLSYPTEKWFLLGNFVAANVKHAQSFKLPEPKWVRVGMTKDPAAMHKIPDPVVEVRQMPTGRIPGDTVLKILMQKVRSLELNLSVLEEYIKELNRREGNVLPELDKELSRISLLLEKSRAEIKDLLEWKEITEKGITDLESWKTAVSSQVQELARENDMLRLDVKKVVTEQSSLENKELAVVAVSFSIACVAVLKLVSDRVLTLFGAAQSGEVGQKSRGWVLILVSSSMMIFITFLCS* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1605078 1609494 + Vvi2g155 Vvi2g155 782854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g155 515 Coils Coil 427 447 - -
Vvi2g155 515 Coils Coil 346 373 - -
Vvi2g155 515 PANTHER MEMBRANE PROTEIN CH1 RELATED 315 514 IPR045120 GO:0016020
Vvi2g155 515 PANTHER MEMBRANE PROTEIN CH1 RELATED 1 312 IPR045120 GO:0016020
Vvi2g155 515 ProSiteProfiles SUN domain profile. 180 353 IPR012919 -
Vvi2g155 515 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 315 514 - -
Vvi2g155 515 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 1 312 - -
Vvi2g155 515 Pfam Sad1 / UNC-like C-terminal 215 311 IPR012919 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g155 - - - vvi:100259778 631.713
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g155 . . . . . . . . . . Cma02g00925 . Car02g00673 . . . Cpe05g00787 . . . . . . . . . . . . . . . . . . . Csa05g00188 . . . . . . . . . . . Cmo02g00933 . . . . . . . . . . . . . . Cla01g00171 Cam01g0175 Cec01g0173 Cco01g0176 Clacu01g0171 Cmu01g0169 Cre09g2336 Lsi09g00159 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012901 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 0 0 0 1 1 1 1 1 1 0 1 3 2 1 28