Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g156 ATGTGCATGAGTAAAGGGTCTGACTCAAAAATGGTAAATTTAATATATTTTCTTTCTAATTTTCTTAATAGGTTTGGATGCGATTTCTCATTTTTGCAGTTTTTAGTAGCGCTAGTGGTGTCCGGACTCTGTTTGGTGTGCGCTCTGTTCGCCGTCCGATTTTCTCCGGCGTCGTTTGGCCGGAAATCGAGATCAGTGGAATCGGACGGGGGCGGGAGTGGGGGTTCATTGAGAAAGGCGTGTTCTTGTGATTGTTTGTGTAGGAGTGCGGAGTCAGGACCGGCGACGGCGACGGCGGCTGCGGCGGCGTACTTGAACGGTGGTGCAGAGGAGATGCTAGATAGGGCCCTGGTGGTATCGGAGCGGCAGACGGGGGCCTCGATGATGGAGCAGTTGGTGCCGGAGATTACGACTCATGCGCTGAGTTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGGATTTCACATTGGAACAAGACAGTGTGACACCAACCAATGGATGGAAGGCTTACTATGCAGCTACAAGAGCCATTGTGAATATCAATGCGGAATTCTTTAACATCATCAGAGAAAGATCAATTACATCGATGAGTCGTCTTTGGTTTAATGCAGATTATGTGAAGTGTGTTCACGCCTCAGGAGAGCTTTTCACAGGGTACAATGCAGTAATAGAGAGCTGGCAGCTTGCCTTCAACTGGGACCAAGGTGTCGACTTCCAGGTGCGGGATGTAAGGGCTCGGGTGCTTACAGACATGGCTTGGGTCACAATGAAAACTTTCGTTGACATGGAAACTGGGCCATTTAACGTAACAAATGTTTTTGAGTTCCATAATGGCCGCTGGTTCATGGTGCACCATCATAGTTCTGTGCTCATTGATGGAGAGGTGGATCAACAGATTGTGAATGGGTAG 978 48.26 MCMSKGSDSKMVNLIYFLSNFLNRFGCDFSFLQFLVALVVSGLCLVCALFAVRFSPASFGRKSRSVESDGGGSGGSLRKACSCDCLCRSAESGPATATAAAAAYLNGGAEEMLDRALVVSERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIVNINAEFFNIIRERSITSMSRLWFNADYVKCVHASGELFTGYNAVIESWQLAFNWDQGVDFQVRDVRARVLTDMAWVTMKTFVDMETGPFNVTNVFEFHNGRWFMVHHHSSVLIDGEVDQQIVNG* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1610313 1615187 + Vvi2g156 Vvi2g156 782855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g156 325 ProSiteProfiles F-box domain profile. 126 172 IPR001810 GO:0005515
Vvi2g156 325 PANTHER F-BOX PROTEIN SKIP8 29 324 IPR044260 -
Vvi2g156 325 Gene3D - 193 321 - -
Vvi2g156 325 SUPERFAMILY F-box domain 125 204 IPR036047 GO:0005515
Vvi2g156 325 Gene3D - 114 170 - -
Vvi2g156 325 Pfam SnoaL-like domain 201 314 IPR037401 -
Vvi2g156 325 SUPERFAMILY NTF2-like 195 313 IPR032710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g156 - - - vvi:100264977 587.415
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g156 . Blo03g00257 Bda06g00156 . . Bpe07g00062 . . . Cmo16g00590 . . . . . Cpe14g00453 . . . . . . . . Cla07g01091 Cam07g1407 Cec07g1254 Cco07g1231 Clacu07g1156 Cmu07g1135 Cre07g1515 . . Cone6ag0862 Cone9ag0864 Lsi07g01122 . . Cme07g01541 . . . . . . . Bma12g00615 . . . . Cma16g00538 . . . . . . . . . . . . . . . . . . . Csa04g00672 Chy07g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007131 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 2 1 36