Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g160 ATGCAAGAGAATCTCAAGAGACAGCTCTTTGGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACCCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGAATGTGCCAGAGGCCCTCTCTCTGTTGGACATCTTCAATGAGAAAACCCCCTGA 369 52.3 MQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPMEEDSFRPVLHHYDGPKFRLELNVPEALSLLDIFNEKTP* 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1637890 1640114 - Vvi2g160 Vvi2g160 782859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g160 122 ProSiteProfiles DCD domain profile. 1 119 IPR013989 -
Vvi2g160 122 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN 1 120 - -
Vvi2g160 122 PANTHER - 1 120 IPR044832 GO:0034976
Vvi2g160 122 SMART dcd 1 119 IPR013989 -
Vvi2g160 122 Pfam Development and cell death domain 1 117 IPR013989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g160 - - - vvi:100252953 258.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g160 . . . . . . Bma07g01687 . . Cmo16g00586 . . . . . Cpe14g00450 . . . . . . . . Cla07g01087 Cam07g1411 Cec07g1250 Cco07g1227 Clacu07g1152 Cmu07g1131 Cre07g1511 . . . . . . . Cme07g01537 . Blo19g00370 . Bda09g00012 Bpe08g01522 . . . . . . . Cma16g00534 . . . . . . . . . . . . . . . . . . . Csa04g00676 Chy07g01134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007398 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 36