Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g162 | ATGATGGTAGGTTTCGGAGGAGAGGGAGATGATCTGTATGCAGAGCTCTGGAAGGCGTGTGCGGGCCCACTCGTTGACGTTCCTCGGCGGGGAGAGAGGGTGTTCTATTTTCCGCAAGGACACGTGGAGCAATTGGAGGCGTCGACGAATCAGGAGCTGAGTCAACGGATTCCGCTGTTTAATCTTCCTTCGAAGATCCTTTGTCGCGTTATTCACATTCAACTCCGGGCTGAACAAGAAACAGATGAGGTTTATGCGCAAATTACTTTACTGCCAGAACCAGATCAAGCTGAGCCTAGAAGTCCTGATCCGTGTACTCCGGAGCCTCCAAGACCCACGGTGCACTCATTTTGCAAGGTTCTAACTGCCTCTGATACTAGCACTCATGGTGGTTTTTCTGTTCTCCGAAAACATGCTAATGAATGCCTTCCTCAACTGGACATGAACCAGGCAACCCCAACGCAGGAATTGGTTGCTAAGGATCTTCATGGCTATGAGTGGAGATTTAAGCATATTTTCAGAGGTCAACCTCGGAGGCATTTACTTACAACAGGATGGAGTACATTTGTTACTTCTAAGAGATTAGTTGCAGGGGATTCCTTTGTATTCTTGAGGGGGGACAATGGAGAATTACGGGTTGGAGTTAGGCGGCTTGCCCGTCAACAGAGTACGATGCCTACGTCTGTGATCTCTAGCCAGAGCATGCACCTGGGAGTGCTTGCAACTGCATCTCATGCTGTTGCAACCCAGACCCTCTTCATTGTATATTATAAACCAAGGACAAGTCAATTCATCATAGGCTTGAACAAATATTTAGAAGCTGTTAGCAATGGGTTTGCTGTTGGTATGCGATTCAAGATGAGATTTGAAGGCGAGGATTCTCCTGAGAGAAGGTTTTCGGGCACAATCGTTGGCGGAGAAGATTTTTCTCCAGAGTGGAAAGATTCTGAATGGAGATCATTGAAGGTTCAATGGGATGAACCTGCTTCCATTCCTAGACCTGAGAAGGTTTCTCCATGGGAGATAGAACATTATGTTTCTTCAGTGCCACAAGGCCTAGCTCCACCAGGAGTTCTAAAGAACAAAAGACCACGATCTAATGAAAGCCCAGTTCCTGAAACAGGATCTGCAGCTGCATCAGCTGTCTGGCATCTTGGATTGACTCAGTCTCATGATTTAACTCAAATGAGTAGCACTGCTGAAGGAAAAAGAAGTGAAAACCATGTTATGTGGCATCACAAGCAGGCAGATATAGGTGGTCCACTCATAAATAGCAATACCGCCTGTGTATCAAGGACTCAGACCGAGGGGAGCTGGCTATCCTCTTCCCACGTGAGTGCTTCTCAGCATCAGTTTCAGGATGCAACAGAAGATAGTAAAAGTGTGTCTGCCTGGCCTGCTCTATCAGGCTATTCAACGCTGCACTCATCCAAGCTCACTAGCGATACAATCATTGACCCAAATGGAAATGGGAAGAAAGCCGTCGCTGAGATGGCTACAAGTTGCCGGCTGTTTGGCTTTGAGCTGATGAATCACTCAAGCTCACCTCCTGTGGGGAAGGCACATGGCCATTCAATCAGTGTTTCGAGCGGCACTGATTCAGACCAAAAGTCTGACCTGTCAAAGGCTTCCAAAGAGCAGAAGCAAGGACAGTCACATGTCTCCCCTAAAGAGATTCAGAGCAAGCAGAATTGCTATTCAAATACAAGAAGTCGAACCAAGGTCCAAATGCAGGGTATTGCCGTTGGTCGGGCTGTGGACTTGACTGCATTGGAAGGGTATGATGAGCTTATTGATGAACTAGAGGAGATGTTTGAAATTAAGGGAGAGCTTCGGCCACGGTATAAATGGGAAATTGTCTTCACAGATGATGAAGGGGATATGATGCTTGTGGGCGATGATCCATGGCCGGAATTCTGTAACATGGTGAGAAGAATTTTCATTTGCTCAAGCCAAGATGTGAAGAAGATGAGCCCAGGAAGCAAACTTCCCATCTCTTCCATGGAAGGTGAAGGGACTACCATAAGCTTAGACTCAACCGAAAATTAG | 2049 | 46.85 | MMVGFGGEGDDLYAELWKACAGPLVDVPRRGERVFYFPQGHVEQLEASTNQELSQRIPLFNLPSKILCRVIHIQLRAEQETDEVYAQITLLPEPDQAEPRSPDPCTPEPPRPTVHSFCKVLTASDTSTHGGFSVLRKHANECLPQLDMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGDNGELRVGVRRLARQQSTMPTSVISSQSMHLGVLATASHAVATQTLFIVYYKPRTSQFIIGLNKYLEAVSNGFAVGMRFKMRFEGEDSPERRFSGTIVGGEDFSPEWKDSEWRSLKVQWDEPASIPRPEKVSPWEIEHYVSSVPQGLAPPGVLKNKRPRSNESPVPETGSAAASAVWHLGLTQSHDLTQMSSTAEGKRSENHVMWHHKQADIGGPLINSNTACVSRTQTEGSWLSSSHVSASQHQFQDATEDSKSVSAWPALSGYSTLHSSKLTSDTIIDPNGNGKKAVAEMATSCRLFGFELMNHSSSPPVGKAHGHSISVSSGTDSDQKSDLSKASKEQKQGQSHVSPKEIQSKQNCYSNTRSRTKVQMQGIAVGRAVDLTALEGYDELIDELEEMFEIKGELRPRYKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSPGSKLPISSMEGEGTTISLDSTEN* | 683 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1653586 | 1657804 | + | Vvi2g162 | Vvi2g162 | 782861 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g162 | 682 | Gene3D | - | 566 | 658 | - | - | |
Vvi2g162 | 682 | ProSiteProfiles | PB1 domain profile. | 570 | 651 | IPR000270 | GO:0005515 | |
Vvi2g162 | 682 | CDD | B3_DNA | 115 | 217 | IPR003340 | GO:0003677 | |
Vvi2g162 | 682 | Gene3D | - | 279 | 349 | - | - | |
Vvi2g162 | 682 | SMART | B3_2 | 117 | 219 | IPR003340 | GO:0003677 | |
Vvi2g162 | 682 | MobiDBLite | consensus disorder prediction | 353 | 378 | - | - | |
Vvi2g162 | 682 | Pfam | AUX/IAA family | 617 | 659 | IPR033389 | - | |
Vvi2g162 | 682 | Pfam | AUX/IAA family | 548 | 606 | IPR033389 | - | |
Vvi2g162 | 682 | MobiDBLite | consensus disorder prediction | 656 | 682 | - | - | |
Vvi2g162 | 682 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 2 | 669 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Vvi2g162 | 682 | Pfam | B3 DNA binding domain | 117 | 217 | IPR003340 | GO:0003677 | |
Vvi2g162 | 682 | SUPERFAMILY | DNA-binding pseudobarrel domain | 108 | 246 | IPR015300 | - | |
Vvi2g162 | 682 | Pfam | Auxin response factor | 243 | 322 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Vvi2g162 | 682 | PANTHER | AUXIN RESPONSE FACTOR 9 | 2 | 669 | - | - | |
Vvi2g162 | 682 | MobiDBLite | consensus disorder prediction | 667 | 682 | - | - | |
Vvi2g162 | 682 | MobiDBLite | consensus disorder prediction | 515 | 570 | - | - | |
Vvi2g162 | 682 | MobiDBLite | consensus disorder prediction | 547 | 570 | - | - | |
Vvi2g162 | 682 | Gene3D | - | 114 | 218 | IPR015300 | - | |
Vvi2g162 | 682 | SUPERFAMILY | CAD & PB1 domains | 564 | 646 | - | - | |
Vvi2g162 | 682 | ProSiteProfiles | B3 DNA-binding domain profile. | 117 | 219 | IPR003340 | GO:0003677 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14566 | PF02309 | AUX_IAA | 2.60E-10 | CL0072 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g162 | K14486 | - | vvi:100247833 | 1366.29 |