Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g162 ATGATGGTAGGTTTCGGAGGAGAGGGAGATGATCTGTATGCAGAGCTCTGGAAGGCGTGTGCGGGCCCACTCGTTGACGTTCCTCGGCGGGGAGAGAGGGTGTTCTATTTTCCGCAAGGACACGTGGAGCAATTGGAGGCGTCGACGAATCAGGAGCTGAGTCAACGGATTCCGCTGTTTAATCTTCCTTCGAAGATCCTTTGTCGCGTTATTCACATTCAACTCCGGGCTGAACAAGAAACAGATGAGGTTTATGCGCAAATTACTTTACTGCCAGAACCAGATCAAGCTGAGCCTAGAAGTCCTGATCCGTGTACTCCGGAGCCTCCAAGACCCACGGTGCACTCATTTTGCAAGGTTCTAACTGCCTCTGATACTAGCACTCATGGTGGTTTTTCTGTTCTCCGAAAACATGCTAATGAATGCCTTCCTCAACTGGACATGAACCAGGCAACCCCAACGCAGGAATTGGTTGCTAAGGATCTTCATGGCTATGAGTGGAGATTTAAGCATATTTTCAGAGGTCAACCTCGGAGGCATTTACTTACAACAGGATGGAGTACATTTGTTACTTCTAAGAGATTAGTTGCAGGGGATTCCTTTGTATTCTTGAGGGGGGACAATGGAGAATTACGGGTTGGAGTTAGGCGGCTTGCCCGTCAACAGAGTACGATGCCTACGTCTGTGATCTCTAGCCAGAGCATGCACCTGGGAGTGCTTGCAACTGCATCTCATGCTGTTGCAACCCAGACCCTCTTCATTGTATATTATAAACCAAGGACAAGTCAATTCATCATAGGCTTGAACAAATATTTAGAAGCTGTTAGCAATGGGTTTGCTGTTGGTATGCGATTCAAGATGAGATTTGAAGGCGAGGATTCTCCTGAGAGAAGGTTTTCGGGCACAATCGTTGGCGGAGAAGATTTTTCTCCAGAGTGGAAAGATTCTGAATGGAGATCATTGAAGGTTCAATGGGATGAACCTGCTTCCATTCCTAGACCTGAGAAGGTTTCTCCATGGGAGATAGAACATTATGTTTCTTCAGTGCCACAAGGCCTAGCTCCACCAGGAGTTCTAAAGAACAAAAGACCACGATCTAATGAAAGCCCAGTTCCTGAAACAGGATCTGCAGCTGCATCAGCTGTCTGGCATCTTGGATTGACTCAGTCTCATGATTTAACTCAAATGAGTAGCACTGCTGAAGGAAAAAGAAGTGAAAACCATGTTATGTGGCATCACAAGCAGGCAGATATAGGTGGTCCACTCATAAATAGCAATACCGCCTGTGTATCAAGGACTCAGACCGAGGGGAGCTGGCTATCCTCTTCCCACGTGAGTGCTTCTCAGCATCAGTTTCAGGATGCAACAGAAGATAGTAAAAGTGTGTCTGCCTGGCCTGCTCTATCAGGCTATTCAACGCTGCACTCATCCAAGCTCACTAGCGATACAATCATTGACCCAAATGGAAATGGGAAGAAAGCCGTCGCTGAGATGGCTACAAGTTGCCGGCTGTTTGGCTTTGAGCTGATGAATCACTCAAGCTCACCTCCTGTGGGGAAGGCACATGGCCATTCAATCAGTGTTTCGAGCGGCACTGATTCAGACCAAAAGTCTGACCTGTCAAAGGCTTCCAAAGAGCAGAAGCAAGGACAGTCACATGTCTCCCCTAAAGAGATTCAGAGCAAGCAGAATTGCTATTCAAATACAAGAAGTCGAACCAAGGTCCAAATGCAGGGTATTGCCGTTGGTCGGGCTGTGGACTTGACTGCATTGGAAGGGTATGATGAGCTTATTGATGAACTAGAGGAGATGTTTGAAATTAAGGGAGAGCTTCGGCCACGGTATAAATGGGAAATTGTCTTCACAGATGATGAAGGGGATATGATGCTTGTGGGCGATGATCCATGGCCGGAATTCTGTAACATGGTGAGAAGAATTTTCATTTGCTCAAGCCAAGATGTGAAGAAGATGAGCCCAGGAAGCAAACTTCCCATCTCTTCCATGGAAGGTGAAGGGACTACCATAAGCTTAGACTCAACCGAAAATTAG 2049 46.85 MMVGFGGEGDDLYAELWKACAGPLVDVPRRGERVFYFPQGHVEQLEASTNQELSQRIPLFNLPSKILCRVIHIQLRAEQETDEVYAQITLLPEPDQAEPRSPDPCTPEPPRPTVHSFCKVLTASDTSTHGGFSVLRKHANECLPQLDMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGDNGELRVGVRRLARQQSTMPTSVISSQSMHLGVLATASHAVATQTLFIVYYKPRTSQFIIGLNKYLEAVSNGFAVGMRFKMRFEGEDSPERRFSGTIVGGEDFSPEWKDSEWRSLKVQWDEPASIPRPEKVSPWEIEHYVSSVPQGLAPPGVLKNKRPRSNESPVPETGSAAASAVWHLGLTQSHDLTQMSSTAEGKRSENHVMWHHKQADIGGPLINSNTACVSRTQTEGSWLSSSHVSASQHQFQDATEDSKSVSAWPALSGYSTLHSSKLTSDTIIDPNGNGKKAVAEMATSCRLFGFELMNHSSSPPVGKAHGHSISVSSGTDSDQKSDLSKASKEQKQGQSHVSPKEIQSKQNCYSNTRSRTKVQMQGIAVGRAVDLTALEGYDELIDELEEMFEIKGELRPRYKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSPGSKLPISSMEGEGTTISLDSTEN* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1653586 1657804 + Vvi2g162 Vvi2g162 782861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g162 682 Gene3D - 566 658 - -
Vvi2g162 682 ProSiteProfiles PB1 domain profile. 570 651 IPR000270 GO:0005515
Vvi2g162 682 CDD B3_DNA 115 217 IPR003340 GO:0003677
Vvi2g162 682 Gene3D - 279 349 - -
Vvi2g162 682 SMART B3_2 117 219 IPR003340 GO:0003677
Vvi2g162 682 MobiDBLite consensus disorder prediction 353 378 - -
Vvi2g162 682 Pfam AUX/IAA family 617 659 IPR033389 -
Vvi2g162 682 Pfam AUX/IAA family 548 606 IPR033389 -
Vvi2g162 682 MobiDBLite consensus disorder prediction 656 682 - -
Vvi2g162 682 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi2g162 682 Pfam B3 DNA binding domain 117 217 IPR003340 GO:0003677
Vvi2g162 682 SUPERFAMILY DNA-binding pseudobarrel domain 108 246 IPR015300 -
Vvi2g162 682 Pfam Auxin response factor 243 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi2g162 682 PANTHER AUXIN RESPONSE FACTOR 9 2 669 - -
Vvi2g162 682 MobiDBLite consensus disorder prediction 667 682 - -
Vvi2g162 682 MobiDBLite consensus disorder prediction 515 570 - -
Vvi2g162 682 MobiDBLite consensus disorder prediction 547 570 - -
Vvi2g162 682 Gene3D - 114 218 IPR015300 -
Vvi2g162 682 SUPERFAMILY CAD & PB1 domains 564 646 - -
Vvi2g162 682 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g162 Vvi15g675 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14566 PF02309 AUX_IAA 2.60E-10 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g162 K14486 - vvi:100247833 1366.29