Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g17 ATGCCTTATTCAAGGGAAGGAAGATCTGTTTCACCTGCCAACTCGGGTTCACCCATTCGGGGGCGACGATCAAGGTCAAGGTCGAGGTCAAGGTCATTGTCGAGGTCTAGGAGGAGTCGCTCGAGGAGCCGCGATTCGGTAGATGCTGTTAACCCGGGAAATAACTTGTATGTGACGGGTTTGTCAACAAGAGTTAATGCCAGTGATCTTGAGAAGTATTTTAACAGTGAAGGGAAGGTTGTTGAGTGCCATCTGGTAACAGATCCTCGCACCAGAGAATCCCGTGGATTTGGTTTTGTCACTATGGAGACTGTTGAGGATGCAGACCGCTGTATTAAATATCTTAATCGTTCTGTGCTTGAAGGTCGCCTCATCACCGTGGAAAAGGTCTGGTCTGTGTAG 402 48.51 MPYSREGRSVSPANSGSPIRGRRSRSRSRSRSLSRSRRSRSRSRDSVDAVNPGNNLYVTGLSTRVNASDLEKYFNSEGKVVECHLVTDPRTRESRGFGFVTMETVEDADRCIKYLNRSVLEGRLITVEKVWSV* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 251331 253144 - Vvi2g17 Vvi2g17 782716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g17 133 SMART rrm1_1 55 128 IPR000504 GO:0003723
Vvi2g17 133 SUPERFAMILY RNA-binding domain, RBD 8 129 IPR035979 GO:0003676
Vvi2g17 133 MobiDBLite consensus disorder prediction 22 38 - -
Vvi2g17 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Vvi2g17 133 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 1 130 - -
Vvi2g17 133 Gene3D - 4 131 IPR012677 -
Vvi2g17 133 PANTHER OS08G0385900 PROTEIN 1 130 - -
Vvi2g17 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 125 IPR000504 GO:0003723
Vvi2g17 133 CDD RRM_RBMX_like 53 129 - -
Vvi2g17 133 MobiDBLite consensus disorder prediction 1 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g17 K12897 TRA2; transformer-2 protein - vvi:100263989 213.001
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g17 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001983 1 3 0 2 1 2 3 2 3 2 1 2 2 2 2 4 2 2 4 3 2 2 2 2 2 2 1 4 1 2 63