Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g175 ATGGGAGGAGGAGGTCTAACCGATCAGAGCCAATGCCTTCCTCTTCACACACGGGCGCTACCGCATCACACCAGCGCAAACCGAGTATTTGCAGTTGTCTACTTGTGTGCCATCTTAGCTCTGCTGTATCATCACTTCCTTGCTCTACTTCACACCACCACCGTAGTCTCCCTCCTCTTTCTTCTAGCTGATGCAGTGCTGGCTTTCATGTGGGCAACCGCACAGGCCTTTCGGATGTGTCCAACCCAACGTCAGGTTTTCATCGAACACCTTCAACATGTTGCCAAGGAGAGTGATTATCCGGCACTGGATGTGTTTATCTGCACTGCTGATCCATACAAGGAGCCACCTATAAGTGTGGTGAACACTGCTCTATCTGTGATGGCATATGATTATCCAACAGAGAAATTGTCAGTATATGTATCAGATGATGGAGGTTCGCAGCTGACCCTCTTTGCTTTCATGGGGGCTGCTAGGTTTGCAACCCACTGGCTACCTTACTGCAGGAAGAACAAGATTTTAGAGAGGTGTCCAGAGGCCTATTTTGAATCAAACCCCTCATCGTGGTTCCCTGAGGCTGATCAAATTAAGCTGATGTACGAGAACATGAGAGTTAGGGTGGAGACTGCGGTTAAGAGTGGGATAATTAGCCATGATTATATCAATAGCAAGCAGGAATTGGAAGCTTTCATCAGATGGACTGATGGATTTACATCTCAGAATCATCCTGCAGTGATTCAGGTTTTGTTGGAGTGTGGTAAAGATGAGGATGTCATGGGCCATACGATGCCCAACCTTGTTTACGTATCCAGAGGGAAAAGCATCAATTTGCCCCACAATTTCAAGGCTGGTGCTCTTAATGCCCTGCTTCGTGTATCAGCCACCATGACTAATGCACCAGTGATCCTGACCCTAGATAGCGACATGTACTCCAATGATCCACAGACACCTCTTCGTGTGCTGTGTTATCTCTTAGACCCCTCTATGGATCCAAAACTTGCGTATGTTCAGTTTCCTCAGATCTTCTATGCGATCAACAAGAATGATATTTATGGTGGTGAAGCCAGGCATGTATTTCAAACTCATCCCACGGGAATGGATGTACTGAAAGGCCCTATATATCTAGGTACAGGAGGTTTTTTCCGGCGAAAAGTCTTCTTTGGGGACCCATCAGAAACCTTTGAATTGAAGCAGGATCACCTAGGGAGCAAGTCAATCAAGTCCAGGGAAATTTTAGCATCGGCGCATCATGTTGCAGACTGCAATTTTGAGAGCCAGAGCCAATGGGGCACCAAGATGGGCTTTAGGTATGGATCACTGGTTGAGGACATGTACACTAGCTATATGCTTCAATGTGAGGGATGGAAGTCCATTTTTTGCCATCCCAAAAGGCCTGCATTTCTCCCCCAGCTAGCCCTACTCAAACCAGCCATAATAAACTTGGTCTCATTCCTATGGGGCATGAACTACTATTATTTCCATATTCTTGGCTTGGGCTCTTTGCATAATTCATGGTTTCGAATTTTACATGTATCAAATCCTTGGTTTTTCTTATATGTATTTCTTTTCCTCGGAGCATTTACTCAAGATTATCTCGACTTCATATTATTTGGGGGAACAACCCAAAATTGGTGGAACAATCAGAGAGCATGGATGATTCGGGGACTAACAGGTTTCTCATTTGGATCTGTGGAATACCTTCTAAAATCATTAGGTATTTCCCCATATGGATTTAATGTGACAAGCAAGGTGGTGGATGAGGAACAAAGCAAGCGATACAATCAAGGGGAGTTTGAGTTTGGAGCCCCATCACCTTTGTTCTTGCCATTAGCAACAGCAGCAATACTCAACTTGGTCTCTTTCCCCATTGGGAATCATACAAGTTCTCAATCAAAGAAGCCTTGA 1905 45.04 MGGGGLTDQSQCLPLHTRALPHHTSANRVFAVVYLCAILALLYHHFLALLHTTTVVSLLFLLADAVLAFMWATAQAFRMCPTQRQVFIEHLQHVAKESDYPALDVFICTADPYKEPPISVVNTALSVMAYDYPTEKLSVYVSDDGGSQLTLFAFMGAARFATHWLPYCRKNKILERCPEAYFESNPSSWFPEADQIKLMYENMRVRVETAVKSGIISHDYINSKQELEAFIRWTDGFTSQNHPAVIQVLLECGKDEDVMGHTMPNLVYVSRGKSINLPHNFKAGALNALLRVSATMTNAPVILTLDSDMYSNDPQTPLRVLCYLLDPSMDPKLAYVQFPQIFYAINKNDIYGGEARHVFQTHPTGMDVLKGPIYLGTGGFFRRKVFFGDPSETFELKQDHLGSKSIKSREILASAHHVADCNFESQSQWGTKMGFRYGSLVEDMYTSYMLQCEGWKSIFCHPKRPAFLPQLALLKPAIINLVSFLWGMNYYYFHILGLGSLHNSWFRILHVSNPWFFLYVFLFLGAFTQDYLDFILFGGTTQNWWNNQRAWMIRGLTGFSFGSVEYLLKSLGISPYGFNVTSKVVDEEQSKRYNQGEFEFGAPSPLFLPLATAAILNLVSFPIGNHTSSQSKKP* 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1738782 1744976 + Vvi2g175 Vvi2g175 782874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g175 634 Pfam Cellulose synthase 405 467 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi2g175 634 Pfam Cellulose synthase 103 399 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi2g175 634 Pfam Cellulose synthase 500 624 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi2g175 634 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 485 627 - -
Vvi2g175 634 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 14 470 - -
Vvi2g175 634 PANTHER - 14 470 - -
Vvi2g175 634 PANTHER - 485 627 - -
Vvi2g175 634 SUPERFAMILY Nucleotide-diphospho-sugar transferases 105 537 IPR029044 -
Vvi2g175 634 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 91 176 IPR029044 -
Vvi2g175 634 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 224 388 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g175 - - - vvi:100258169 1061.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g175 . . . . . . . . . Cmo16g00583 . . . . . . . . . . . . . . Cla07g01084 Cam07g1416 Cec07g1246 Cco07g1222 Clacu07g1148 Cmu07g1128 Cre07g1505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000342 1 6 2 1 2 4 0 5 7 6 5 6 5 5 3 5 5 8 1 6 3 1 1 8 2 9 1 5 5 14 132