Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g177 ATGTATTTTGAAAATTTATCTTTAGGGAAAGAAAAATATAGTACTCTCTTCTCCATTATTCTGTTTCTGCTGTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCCACTCCCTCATCTACTGCACCAATGCTTCCAAGAAGCATGAATCAAGCAGCTTCATTTCTCTCCCTAATCGATTTGAAGGGAGAGCTCAAAGGCAAGCTTCCAACAATCTTGTTTGATGAAGAATTGAAGGCAAGGGACTCACAATGTTGTGTTTGCCTGGGAGAATTCGAAATCAAAGAGGAGTACACCTTACACCAGATTCCGTCGTGCAAACATGAGTTTCCTGCGGACTGCATATACCACTGGCTTCGTACAAACTCTACTTGTCCCATCTGTCGCTGCTCTGTCTTTCCCAATACCAAAGGAGGCAATCCAGTGGCCCCTGTTCACAGCAACAAGAAGAAAACATTGGTGTTAGGTTGGATATCTCTGATTCTTCCAGTGGACAGCAGATGGTACCAACAGACGGATCTTCTAGCTCGAGTTTAA 534 43.26 MYFENLSLGKEKYSTLFSIILFLLFYLFYLKRRASTPSSTAPMLPRSMNQAASFLSLIDLKGELKGKLPTILFDEELKARDSQCCVCLGEFEIKEEYTLHQIPSCKHEFPADCIYHWLRTNSTCPICRCSVFPNTKGGNPVAPVHSNKKKTLVLGWISLILPVDSRWYQQTDLLARV* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1777415 1779497 - Vvi2g177 Vvi2g177 782876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g177 177 SUPERFAMILY RING/U-box 66 134 - -
Vvi2g177 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 14 139 - -
Vvi2g177 177 ProSiteProfiles Zinc finger RING-type profile. 84 128 IPR001841 -
Vvi2g177 177 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 14 139 - -
Vvi2g177 177 Pfam Ring finger domain 83 128 IPR001841 -
Vvi2g177 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 133 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g177 K19039 ATL7_58_59; E3 ubiquitin-protein ligase ATL7/58/59 [EC:2.3.2.27] - vvi:100266728 218.009
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g177 Blo02g01161 Blo03g00259 . Bda08g00456 Bpe05g00706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00928 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010674 2 1 1 0 1 1 1 0 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32