Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g184 ATGGGTCTTCCTCAAACTCCGACTCCTACTCATCTCTATCCTGAAGCACTTCAACTTAAGCTTTACCAGGCCTTCATATTTTCAATCCCAATTCTCTTCTCCATTATTCTGTTTCTGCTGTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCCACTTCCTCATCTACTGCACCAATACTTCCAAGCAGTATGAATCAAGCAGCTTCATTTCTCTCCCCATCATGTGAGATCGGTTTGAAGGGAGAGCTCAAAGGCAAGCTTCCAACAATCTTGTTTGATGACGAATTGAAGGCAAGGGACTCACTATGTTGTGTTTGCCTGGGAGAATTTGAAATCAAAGAGGAGTTACACCAGGTTCCGTCGTGCAAACATGTGTTTCATGCCGACTGCATATACCACTGGCTTCGTACAAACTCTACTTGTCCACTCTGTCGCTGCTCTGTCTTCCCCAATACCAAAGCAGGCAATCCAGTGTCCCCTGTTAGATCCGAGCATCCCGATAACCAGAACTCCAACCAGCACAGACAAAATGTCTCTTCACAGCAACAAGAAGAAAACATTGGTGTTAGGTTGGATATCTCTGATTCTTCCAGTGGACAGCAGATGGTACCAACAGACGGATCTTCTAGCTCGAGTTTAAGAGAGCCTGGCAGATCGTCTGAGTTGCCCACTTGCATGGACAGTGAAATGGGTTATCGGGACCAAGAATCAATTGTTCTTCACATTGAAACACACTCAGAAATCTGA 747 45.11 MGLPQTPTPTHLYPEALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASTSSSTAPILPSSMNQAASFLSPSCEIGLKGELKGKLPTILFDDELKARDSLCCVCLGEFEIKEELHQVPSCKHVFHADCIYHWLRTNSTCPLCRCSVFPNTKAGNPVSPVRSEHPDNQNSNQHRQNVSSQQQEENIGVRLDISDSSSGQQMVPTDGSSSSSLREPGRSSELPTCMDSEMGYRDQESIVLHIETHSEI* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1812387 1814056 - Vvi2g184 Vvi2g184 782883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g184 248 SMART ring_2 103 144 IPR001841 -
Vvi2g184 248 MobiDBLite consensus disorder prediction 157 235 - -
Vvi2g184 248 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 16 185 - -
Vvi2g184 248 MobiDBLite consensus disorder prediction 157 218 - -
Vvi2g184 248 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vvi2g184 248 Pfam Ring finger domain 103 145 IPR001841 -
Vvi2g184 248 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 16 185 - -
Vvi2g184 248 SUPERFAMILY RING/U-box 85 152 - -
Vvi2g184 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 152 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g184 K19039 ATL7_58_59; E3 ubiquitin-protein ligase ATL7/58/59 [EC:2.3.2.27] - vvi:100266728 469.159
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g184 . . . Bda08g00453 . . . . . . Cma02g00920 Cma15g01289 Car02g00670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00928 Cmo15g01360 . . . . . Cpe13g00098 . . . . . . . . . . . . . . . . . Cme09g01852
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010674 2 1 1 0 1 1 1 0 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32