Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g187 ATGGAGAGTGTGGCTTCATCTTCTTCAGTTGCACATCAAGAACCTTCAAACTATGATGAATACTCCATGCAGCAGAGCTTGCTCTTTGGAGATAGCCTAAAGGATTTGAAGAGTCTGAGAAAACAGCTGTACTCAGCAGCAGAGTATTTTGAACAATGCTACCATAAAGATGACCAGAAACAAATAGTGCTCGAGACCCTGAAAGATTATGCCATCAAAGCTCTCGTCAATACTGTGGACCACTTGGGGTCTGTAACCTACAAGGTTAACACTTTCTTGGACGACAAAATTGGTGAAGTCCATGGAACTGAGCTTCAGTTCTCTTGCATTGAACAGAGAATAAGGACATGCCGAGAATTCATCAATCGCAGTGGCTTTTGTCAACAGTCCTTGCTGATGAGAACTCCCAAACACCACAAGCGGTACACATTTCCAGGCAAATATGGTGGGGAGACCACAAACACTACTGGGCACACTATACCAACATATCAGACTTGCAGCCCATATGCTGAAGGTGACTTGCATCAATTTTACAAAGGTGGTCTAGCAACAGCTTGGGAGATGCCATCGTCAATGATGGCCAGAGGACATTCTGCGCGACCTTCTCCACAATCTTCCCCTAGACCCAGAGCCTTTCCATTCAATATCACTAGGATTTCATCCAGCAAAGAACGAGATAAACGAGCAGTCTCTCCAAATTATTTTCCACTTATCCGTTCTGGATCTGTAGCTAGCAGATCAACCTCTCCAAACTCTTCTAAAGCTAAGCTACGGACCTCATCAGAGCCTCGATCAGCTTCATTGTTCACCCGTACCGAAAGAGAGAGAGCAAAGGATATTGAACAGCAAACCAGCCAAAGTAAACGTCTTTTCAAAGCCTTGATTAGCATGCGCAAGCCAAAAAAGGACGTGACGTTGTTGGAAAGAGATGGACTTACAGGATGTAAGGCACCCTTTGTTTATGGTTGCAAAAGCAGTGCGGCAGAGAATCTCATGTGCAAGCAATTGTCCATTGCCATTTCGTCGTTGAATTCTTCAATGCTCAAATAG 1050 44.38 MESVASSSSVAHQEPSNYDEYSMQQSLLFGDSLKDLKSLRKQLYSAAEYFEQCYHKDDQKQIVLETLKDYAIKALVNTVDHLGSVTYKVNTFLDDKIGEVHGTELQFSCIEQRIRTCREFINRSGFCQQSLLMRTPKHHKRYTFPGKYGGETTNTTGHTIPTYQTCSPYAEGDLHQFYKGGLATAWEMPSSMMARGHSARPSPQSSPRPRAFPFNITRISSSKERDKRAVSPNYFPLIRSGSVASRSTSPNSSKAKLRTSSEPRSASLFTRTERERAKDIEQQTSQSKRLFKALISMRKPKKDVTLLERDGLTGCKAPFVYGCKSSAAENLMCKQLSIAISSLNSSMLK* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1827631 1830534 + Vvi2g187 Vvi2g187 782886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g187 349 MobiDBLite consensus disorder prediction 238 267 - -
Vvi2g187 349 PANTHER ABL INTERACTOR FAMILY MEMBER 11 306 IPR028457 -
Vvi2g187 349 MobiDBLite consensus disorder prediction 194 268 - -
Vvi2g187 349 PANTHER PROTEIN ABIL3 11 306 - -
Vvi2g187 349 MobiDBLite consensus disorder prediction 197 219 - -
Vvi2g187 349 Gene3D - 20 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g187 - - - vvi:100249566 584.719
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g187 Vvi16g1031 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0234 . . . . . . . . . Bda07g01938 . . . . Bma12g00620 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004623 1 4 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 42