Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g19 ATGGGCCATGGTGAAAAGGGCCGACCCAGCAAAAGGCACAAATCATCTTCCAAGGATGAGCACAAGAACCCGGTTGTTGAAGATGAAGATGCGTATTATGGTGAAGAGTTCGAAGATGATTATCGAGATGGCGAGAAAGAAGGGAAGAAGAGAGATTTCACCAAGTTAGAGCTGAAGGTCGATCATTCCAATAGACCATTATGGGCCTGCGCTGATGGCCGAATCTTTCTTGAAACTTTCTCGCCTTTGTACAAACAAGCCTATGATTTTCTTATTGCCATAGCCGAACCAGTTTGCAGGCCTGAGTCCATGCACGAATACAATTTGACCCCACACTCATTGTATGCGGCAGTGTCGGTTGGTCTTGAAACAGAAACAATTATAGCTGTTTTGAGTAAATTGTCAAAGACCAAACTCCCCAAGGAGATGATTGATTTTATACATGCTTCCACTGCTAATTACGGCAAAGTAAAGCTCGTGCTTAAAAAAAATCGATACTTTGTCGAGTCCCCATTCCCAGAGGTGTTGAAGACATTGCTTCGGGATGAAGTCATATCTCGTTCTAGGATTTCTCACGAGCATGGCAATTTTGGACAAAATTTTTTAGAAATAGACACTGGTACTTTTGGAAGTTATGATGAATACTATATGTCATTTGTTCACATGCAAGTAATATTGTTGTGGCATGATGTAAAGTTCAATATTATGCCCTACAGTTTTTTTAATTTCGCTCTTCTTGTGATATGCGCTTATTTAGATTGTATGTTTTTGAACTTACCTTGCTTCTTACCTCCTTGTATTGGTTCAATATCCTATGGTTCAACTGGAAATGATGGATTTACAATCAGCAAAACAGTTGGTGAAATCGAAGGTCGCCATGATGAGTTAATAAATGAAGCAGAATTGGCAGCTGCAGCTGAAGAAAAAGAAACCCATTCTTTTGAGGTTGACCCTGCTCAGGTTGAAAATGTGAAGCAACGGTGCTTGCCCAATGCTTTAAATTATCCCATGTTGGAGGAGTATGACTTCAGGAACGATACTGTCAACCCTGATCTTGATATGGAACTGAAGCCACAAGCACAGCCACGTCCTTATCAGGAAAAGAGTCTTAGTAAAATGTTTGGGAATGGTAGAGCAAGATCTGGTATTATTGTACTACCATGTGGTGCAGGAAAGTCCTTAGTTGGTGTTTCTGCAGCCTGCCGAATACGTAAGAGCTGCCTTTGTTTAGCAACAAATGCTGTTTCTGTGGATCAGTGGGCCTTTCAGTTCAAGCTGTGGTCTACCATACGAGATGAACAGATATGTCGGTTCACATCTGATAGTAAGGAAAGGTTCCGGGGTAATGCTGGGGTGGTTGTGACAACATATAACATGGTTGCTTTTGGTGGCAAGCGGTCTGAAGAATCTGAGAAGATTATTGAAGAAATAAGAAATAGAGAATGGGGATTGCTTCTCATGGATGAGGTGCATGTAGTTCCTGCTCACATGTTTCGGAAGGTCATCAGCATCACTAAATCTCACTGCAAACTTGGGCTTACTGCTACACTTGTCAGAGAGGATGAGAGGATTACAGATTTGAACTTCCTTATTGGTCCCAAGCTCTATGAAGCAAACTGGTTGGATTTAGTTAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTATGGTGTCCAATGACAAAGGAGTTTTTTGCTGAATATTTAAAGAAAGAAAATTCCAAGAAAAAGCAGGCACTTTATGTGATGAACCCTAATAAGTTTAGGGCTTGTGAGTTTTTAATACGGTTCCATGAGCAGCAGCGTGGTGACAAGATAATTGTTTTTGCTGACAATCTTTTTGCACTCACAGAGTATGCAATGAAGCTTCGGAAACCTATGATCTATGGTGCCACCAGCCACGTTGAAAGAACAAAAATTCTTGAGGCTTTCAAAACTCACAAGGATGTGAACACTATTTTTCTTTCAAAGGTGGGAGATAATTCAATTGATATTCCTGAAGCAAATGTGATTATTCAAATTTCTTCCCATGCTGGTTCAAGACGTCAAGAAGCCCAGCGATTGGGTCGTATTCTTAGGGCAAAGGGTCGACTTCAGGATAGGTTGGCTGGAGGTAAAGAGGAGTACAATGCATTTTTCTATTCCCTCGTATCTACAGATACACAGGAGATGTACTACTCAACAAAAAGGCAGCAGTTCTTGATTGATCAAGGTTATAGCTTTAAGATAATAACAAGCTTGCCTCCGCCTGATTCTGGCGCCGATCTGAGCTACCACCGCCTGGATGAGCAACTGGCACTTCTTGGAAAGGTATTAAGTGCAGGTGATGATGCAGTTGGTCTAGAGCAATTAGATGAAGATGCAGATGACATAGCACTCCAAAAAGCTCGTCGATCTGTGGGATCCATGAGTGCCATGTCTGGTGCTAGTGGGATGGTTTACATGGAATACAATACTGGACGCAACAAACATGGTGGGCAGGGCCAGATCAAGGGTAAGCCCAAGGATCCATCCAAGAGACATCATTTATTCAAGAGACGCTTTGGCTGA 2553 41.87 MGHGEKGRPSKRHKSSSKDEHKNPVVEDEDAYYGEEFEDDYRDGEKEGKKRDFTKLELKVDHSNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLRDEVISRSRISHEHGNFGQNFLEIDTGTFGSYDEYYMSFVHMQVILLWHDVKFNIMPYSFFNFALLVICAYLDCMFLNLPCFLPPCIGSISYGSTGNDGFTISKTVGEIEGRHDELINEAELAAAAEEKETHSFEVDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILEAFKTHKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGRLQDRLAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKIITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALQKARRSVGSMSAMSGASGMVYMEYNTGRNKHGGQGQIKGKPKDPSKRHHLFKRRFG* 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 264632 274383 + Vvi2g19 Vvi2g19 782718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g19 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 791 IPR027417 -
Vvi2g19 850 SMART ultradead3 358 539 IPR014001 -
Vvi2g19 850 PRINTS Xeroderma pigmentosum group B protein signature 65 85 - -
Vvi2g19 850 PRINTS Xeroderma pigmentosum group B protein signature 605 627 - -
Vvi2g19 850 PRINTS Xeroderma pigmentosum group B protein signature 652 670 - -
Vvi2g19 850 PRINTS Xeroderma pigmentosum group B protein signature 671 696 - -
Vvi2g19 850 PRINTS Xeroderma pigmentosum group B protein signature 708 731 - -
Vvi2g19 850 PRINTS Xeroderma pigmentosum group B protein signature 799 818 - -
Vvi2g19 850 PANTHER DNA REPAIR HELICASE XPB1-LIKE 3 193 - -
Vvi2g19 850 PANTHER DNA REPAIR HELICASE XPB1-LIKE 305 849 - -
Vvi2g19 850 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 373 535 IPR014001 -
Vvi2g19 850 SMART helicmild6 618 696 IPR001650 -
Vvi2g19 850 MobiDBLite consensus disorder prediction 836 850 - -
Vvi2g19 850 Pfam ERCC3/RAD25/XPB C-terminal helicase 543 791 IPR032438 -
Vvi2g19 850 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 590 756 IPR001650 -
Vvi2g19 850 MobiDBLite consensus disorder prediction 1 46 - -
Vvi2g19 850 PANTHER RAD25/XP-B DNA REPAIR HELICASE 305 849 - -
Vvi2g19 850 PANTHER RAD25/XP-B DNA REPAIR HELICASE 3 193 - -
Vvi2g19 850 Pfam Type III restriction enzyme, res subunit 361 517 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vvi2g19 850 Gene3D - 544 784 IPR027417 -
Vvi2g19 850 MobiDBLite consensus disorder prediction 12 29 - -
Vvi2g19 850 CDD DEXHc_XPB 354 523 - -
Vvi2g19 850 MobiDBLite consensus disorder prediction 823 850 - -
Vvi2g19 850 Gene3D - 352 543 IPR027417 -
Vvi2g19 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 537 IPR027417 -
Vvi2g19 850 CDD SF2_C_XPB 554 718 - -
Vvi2g19 850 Pfam Helicase conserved C-terminal domain 67 190 IPR032830 -
Vvi2g19 850 TIGRFAM rad25: DNA repair helicase rad25 303 847 IPR001161 GO:0003678|GO:0006289|GO:0006367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g19 K10843 ERCC3, XPB; DNA excision repair protein ERCC-3 [EC:5.6.2.4] - dct:110104065 1185.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30