Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g190 ATGTTGAAAAGTTTTGAGTTTATTTTTTATTTTTCATTGCTGCCATGGACTCCAATTGAGAATCAAGAAGGGTATTGCTTAATTAAAGAGAGGATAACACAGGCCCTTAGGCACTTCAAAGAATCTACTGAACATGTTCTAGCTCAGTTTTGGGCACCTGTGAAGAATGGGGACCAGTGTCTTCTCACCACTTCCGGGCAGCCCTTTGTTCTTGATTCAAATAGTAATAGCCTTCATCAGAACAGGATGATATCTCCGACGTATTTGTTCTCTGTGGATGGGGAGAGTGACGGAGCCCTCGGTCTTCCTGCTCGTGTTTTCAGGCACAAATTGCCAGAGTGGACTCCAAATGTACATTATTACCCCAGCAGAGAGTACCCTCGTCTTGAACATGCTTTGCATTACAATGTCAGGGGAACATTGGCTTTGCCAGTGTTCGAACCTTCAAGGCAGTCCTGTGTGGGTGTGCTTGAGCTTGTAATGACTTCGCAGAAGATTAACTATGCACCGGAGTTGGACAAAATCTGCAAAAGCCTTGGGGAGAGACGTAGGAAATTCTCTTTGTTGTTATATTTCAATTTCCTCTTATACAATGAAGGTTGCCAGAATGCCTTGGCTGAAATCTTGGAGATATTTACCATGGTGTGTGAAACCTACAAATTACCTATGGCTCAAACCTGGGTTCCCTGCAGCCACGGTAGTGGTCCGGGGAAGAGCTCTACTAGCTCTGATGGAAACTACATGGACCACGTCTGCATGTCCACGACTGATGTGGCATTCTACGTTGTAGACGCTCAGACGTGGGGCTTCCGGGAGGCTTGTGCCGAGCATCACCTTCAAAAGGGGCAAGGGGTTGCTGGGAGGGCATTTGAGTCCCATAACTAA 885 46.21 MLKSFEFIFYFSLLPWTPIENQEGYCLIKERITQALRHFKESTEHVLAQFWAPVKNGDQCLLTTSGQPFVLDSNSNSLHQNRMISPTYLFSVDGESDGALGLPARVFRHKLPEWTPNVHYYPSREYPRLEHALHYNVRGTLALPVFEPSRQSCVGVLELVMTSQKINYAPELDKICKSLGERRRKFSLLLYFNFLLYNEGCQNALAEILEIFTMVCETYKLPMAQTWVPCSHGSGPGKSSTSSDGNYMDHVCMSTTDVAFYVVDAQTWGFREACAEHHLQKGQGVAGRAFESHN* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1842258 1843381 + Vvi2g190 Vvi2g190 782889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g190 294 PANTHER PROTEIN NLP8 20 294 IPR045012 GO:0003700
Vvi2g190 294 PANTHER PROTEIN NLP6 20 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g190 - - - vvi:100263398 431.795
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g95 ECH 1 747 NLP Transcription Factor Family AT1G20640 53.1 3.5e-226 781.9
Vvi18g95 ECH 1 740 NLP Transcription Factor Family AT1G76350 55.7 1.1e-221 766.9
Vvi2g191 . 187 867 NLP Transcription Factor Family AT1G64530 58.5 7.7e-224 773.9
Vvi2g190 . 82 294 NLP Transcription Factor Family AT1G64530 69.1 7.0e-84 308.9
Vvi2g191 . 266 866 NLP Transcription Factor Family AT4G24020 55.8 6.5e-199 691.0
Vvi2g190 . 161 290 NLP Transcription Factor Family AT4G24020 62.0 1.5e-41 168.3
Vvi5g1280 . 1 831 NLP Transcription Factor Family AT2G43500 50.2 3.8e-210 728.8
Vvi5g1280 . 90 831 NLP Transcription Factor Family AT3G59580 53.2 1.8e-209 726.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50