Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g191 ATGTCCGAACCAGACGAGGGGATTCGCAAGTCCCGAGACTGTCCTCCGCCATCCCAAGCCGTCGACCGCGACTCCTTCATGGACTTCGATCTCGATCTCGACGGGTCCTGGCCCTTGGACCAGATCTCCTTCGTCTCCAACCCTATGTCTCCCTTCCTCTTCTCCTCCTCCGACCAGCCCTGCTCTCCGCTCTGGGCCTTCTCCGACGATGCCGACGACAAGCCTTCCGCCATCGGCGTCGGCGGCGGTCTTCGTCTATCGGAATGTTCTCGGTTTCTCACATGTAATCCAGATTTGATACCTGAAAGCAGAACAGAGAATGATGAGAAAAGAAGGCTGCCTCCATCGGTTTTCACATTGACACCAATTGAGAATCCAGATGGGTGTTGCATAATTAAAGAGAGGATGACACAGGCTCTTCGATACTTCAAAGAATCTACTGAACAACATGTTCTAGCTCAGGTTTGGGCACCTGTGAAAAATGGGGATCGGTGTCTTCTCACAACATACGGACAGCCCTTTGTTCTTGATCCACATAGTAATGGCCTTCATCAGTACAGGATGATATCTCTGACATATACGTTTTCTGTTGATGGGGAGAGTGACGGAGCCCTCAGGCTTCCTGCTCGTGTTTTCAGGCAAAAATTGCCGGAGTGGACTCCAAATGTACAGTATTACTCCAGCAGAGAGTACTCTCGACTTAATCATGCTTTGCATTACAATGTAAGGGGAACATTGGCTTTGCCAGTGTTTGAACCTTCTGGGCCGTCCTGTGTGGGTGTACTAGAGCTCATTATGACTTCACAGAAGATTAACTATGCACCTGAGGTTGATAAAGTCTGCAAAGCGCTTGAGGCGGTAAATCTCAAAAGTTCAGAAATATTGGAGCATCCAAAGGCACAGATTTGCAATGAAGGTCGCCAGAATGCCTTGGCTGAAATCTTGGAGATATTTACAGTGGTATGTGAAACTTACAAATTACCTCTGGCTCAGACCTGGGTTCCTTGCAGGCATCGCAGTGTTCTAGCTGGTGGTGGTGGTCTGAGGAAGAGCTGCTCTAGCTTTGATGGAAGCTGCATGGGCCAAGTCTGCATGTCCACAACTGATGTAGCATTCTACGTTGTTGACGCTCACATGTGGGGTTTTAGGGAGGCCTGTGCTGAGCATCACTTACAAAAGGGGCAGGGGGTTGCTGGGAGGGCATTTGAGTCCCATAACTCATGCTACTGCAGCAATATTACCCAATTCTGCAAAACTGAGTACCCCTTAGTACACTATGCGCGCATGTTTGGGTTAACTTGCTGTTTTGCAATCTGTTTGCGAAGTACTCACACTGGAAATGATGATTACATTCTAGAGTTCTTTCTGCCCCCTAGTATCACAGACAGTAGAGACCAACAGACCTTGTTGGACTCCCTATTGGCAACAATGAAGCAGCATTTTCAGAGTCTTAGGGTTGCTTCTGGAAAAGAATTTGAAGAGGAGGAAAAATCTGTCGAAATTATCAAATTGCCTATGAATGGGAAGCTCGATTCAAGACTTGAATCTATTCAAATATCGCAATCTACTCCATCTCCACCTGGGCCTGATATCTTGCCAAGCAGGGGAGAGATGCAGCAGCTAGATTCCACAAAACATCAATTAATGCCATCAGAGAGAAAGCGTGGAAAAACTGAGAAATCAATTAGCTTAGAGGTCCTCCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAAAGCCTTGGTGTTTGCCCTACTACAATGAAGCGTATATGCAGGCAGCATGGAATCTCCCGGTGGCCATCTCGTAAGATCAACAAGGTTAATCGTTCCCTCTCTAAGCTAAAGCGTGTAATTGAATCTGTCCAGGTTTCTGAAAGAGCATTTGGTCTAACTTCTCTCACTTCAAGTCCACTCCCTGTCGCTGTTGGTTCCATTTCTTGGCCTGCTACTTTGAATGGACCGTATCAACAAAACTCCCCAGAGCTGGGTAAGGGAGCAACTGGGTCGAAAACAAGGAGTGGGTCAAGGGAAGAGAGTGCTGGGACCCCCACTTCCCATGGTTCATGCCAAGGCAGCCCCGAAAATGAAACAACATCTGCGAAAAATCACTCCAATTCTCCCATCTACGACCAATCTGCATTCTCAATCCCTGAGGCTCTTATCACAACAGAACCCCAAACCCACTTTGGAGGAATGCTGATTGAGGATGCAGGAAGCTCAAAAGACTTGAGAAATCTGTGTCCTTCAGTAGCAGATGCCATGCTAGACGAGCGAGTCCCAGAGTCCACTAGGCCAGATGTGAGGACCATGACCATAAAGGCCACCTACAGAGACGACATAATCAGGTTCCGAATCCCTCTGACCTCCGGCATCGTGGAGTTGAAGGAAGAAGTGGCGAAACGGCTCAAGTTAGAGGTGGGTACTTTCGATATCAAGTATCTCGATGATGATCACGAGTGGGTATTAATCGCCTGCAATGCAGACTTACAGGAGTGCATGGACATATCATGGACTACGGGCAGCAACATAATCAGGTTACTGGTTCAGGATCTAATGACCAATCTGGGTAGCTCCTGCGAAAGCACTGGGGAAACCAATTGTAAGATATTAAACGGTTGA 2625 47.54 MSEPDEGIRKSRDCPPPSQAVDRDSFMDFDLDLDGSWPLDQISFVSNPMSPFLFSSSDQPCSPLWAFSDDADDKPSAIGVGGGLRLSECSRFLTCNPDLIPESRTENDEKRRLPPSVFTLTPIENPDGCCIIKERMTQALRYFKESTEQHVLAQVWAPVKNGDRCLLTTYGQPFVLDPHSNGLHQYRMISLTYTFSVDGESDGALRLPARVFRQKLPEWTPNVQYYSSREYSRLNHALHYNVRGTLALPVFEPSGPSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILEHPKAQICNEGRQNALAEILEIFTVVCETYKLPLAQTWVPCRHRSVLAGGGGLRKSCSSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACAEHHLQKGQGVAGRAFESHNSCYCSNITQFCKTEYPLVHYARMFGLTCCFAICLRSTHTGNDDYILEFFLPPSITDSRDQQTLLDSLLATMKQHFQSLRVASGKEFEEEEKSVEIIKLPMNGKLDSRLESIQISQSTPSPPGPDILPSRGEMQQLDSTKHQLMPSERKRGKTEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQVSERAFGLTSLTSSPLPVAVGSISWPATLNGPYQQNSPELGKGATGSKTRSGSREESAGTPTSHGSCQGSPENETTSAKNHSNSPIYDQSAFSIPEALITTEPQTHFGGMLIEDAGSSKDLRNLCPSVADAMLDERVPESTRPDVRTMTIKATYRDDIIRFRIPLTSGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACNADLQECMDISWTTGSNIIRLLVQDLMTNLGSSCESTGETNCKILNG* 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1850586 1857501 + Vvi2g191 Vvi2g191 782890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g191 874 MobiDBLite consensus disorder prediction 1 24 - -
Vvi2g191 874 CDD PB1_NLP 772 852 IPR034891 -
Vvi2g191 874 MobiDBLite consensus disorder prediction 654 711 - -
Vvi2g191 874 ProSiteProfiles PB1 domain profile. 771 853 IPR000270 GO:0005515
Vvi2g191 874 ProSiteProfiles RWP-RK domain profile. 548 629 IPR003035 -
Vvi2g191 874 SUPERFAMILY CAD & PB1 domains 771 855 - -
Vvi2g191 874 SMART PB1_new 771 853 IPR000270 GO:0005515
Vvi2g191 874 Pfam PB1 domain 771 852 IPR000270 GO:0005515
Vvi2g191 874 PANTHER PROTEIN NLP7 764 864 - -
Vvi2g191 874 PANTHER PROTEIN NLP7 659 763 - -
Vvi2g191 874 PANTHER PROTEIN NLP7 549 662 - -
Vvi2g191 874 PANTHER PROTEIN NLP7 21 523 - -
Vvi2g191 874 Pfam RWP-RK domain 561 609 IPR003035 -
Vvi2g191 874 Gene3D - 768 852 - -
Vvi2g191 874 PANTHER PROTEIN NLP8 764 864 IPR045012 GO:0003700
Vvi2g191 874 PANTHER PROTEIN NLP8 21 523 IPR045012 GO:0003700
Vvi2g191 874 PANTHER PROTEIN NLP8 549 662 IPR045012 GO:0003700
Vvi2g191 874 PANTHER PROTEIN NLP8 659 763 IPR045012 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g191 - - - vvi:100263398 1625.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g191 Blo02g01163 Blo03g00261 . Bda08g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00891 Bma12g00621 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00684 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g95 ECH 1 747 NLP Transcription Factor Family AT1G20640 53.1 3.5e-226 781.9
Vvi18g95 ECH 1 740 NLP Transcription Factor Family AT1G76350 55.7 1.1e-221 766.9
Vvi2g191 . 187 867 NLP Transcription Factor Family AT1G64530 58.5 7.7e-224 773.9
Vvi2g190 . 82 294 NLP Transcription Factor Family AT1G64530 69.1 7.0e-84 308.9
Vvi2g191 . 266 866 NLP Transcription Factor Family AT4G24020 55.8 6.5e-199 691.0
Vvi2g190 . 161 290 NLP Transcription Factor Family AT4G24020 62.0 1.5e-41 168.3
Vvi5g1280 . 1 831 NLP Transcription Factor Family AT2G43500 50.2 3.8e-210 728.8
Vvi5g1280 . 90 831 NLP Transcription Factor Family AT3G59580 53.2 1.8e-209 726.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14567 PF00564 PB1 1.50E-16 CL0072 Vvi TF