Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g193 ATGCAGCTCGGAGATACGTTTTCGATGCTTGGACAGGTTGAACGGTCGATTCATTGTTACGAGGAAGGGTTGAAGATACAGATTGAGGCTTTGGGAGAGACGGATCCCAGAGTTGGAGAGACTTGCAGGTACTTAGCCGAGGCCCGTGTTCAAGCAATGCAATTTGATGAAGCTGAAAGCCTATGCAAGAAAACTCTTGAGATTCACAGTGTGCACAGTGAACCAGCATCTCTTGAAGAGGCAGCTGATCGTCGGCTGATGGCCCTCATATGTGAGGCAAAGGGAGATTATGAATCAGCCCTTGAGCATCTTGTTCTTGCCAGCATGGCAATGATTGCCAATGGACAAGACAATGAGGTTGCTGCTATTGATGTCAGCATTGGTAACATTTATCTTTCCCTTTGCCGCTATGATGAGGCTATCTTCTCTTACCAGAAGGCCCTCACTGTCTTCAAATCATCAAGAGGTGACAACCATCCTTCTGTTGCCTCTGTTTTTGTACGCCTTGCTGAACTATACTACAAGACAGGAAAGCTTCGGGAGTCCGGATCTTACTGTGAAAATGCACTGAGGATATATGCAAAACCTGTGCCAGGAACCACAGCAGAAGAGATTGCAGGTGGAATGACTGAAATTTCAGCCATTTATGAGTCTATAAATGAGCCTGAGGAAGCACTAAAGCTCTTGCAGAAGGCACTGAAATTGTTGGAGGATAAACCAGGACAACAAAGCACAATTGCAGGAATAGAAGCACGGATGGGTGTAATGTTTTACTTGGTTGGGAGGTATGGTGAAGCACGGAGCTCTTTTGAGAGTGCTGTAGCGAAACTTAGGGCCAGTGGGGAGAGGAAATCACCCTTCTTTGGGGTCGTGTTGAACCAGATGGGATTGGCTTGTGTACAGTTGTTCAAGATAGATGAGGCTGTTGAGTTGTTTGAAGAAGCAAGGGGAATACTTGAAAAGGAGTGTGGTCCATGTCACCAAGATACCATTGGAGTATATACCAATCTCGCGGCAACTTATGATGCTATGGGCAGAGTCGAAGATGCAATTGAGATACTGGAGTATGTTCTCAAATTGAGAGAAGAACAGCTTGGAACAGCAAACCCTGATTTTGATGATGAGAAGAAAAGGTTATCTGAGCTCCTGAAGGAAGCAGGCAAGGCCCGTAACAGAAAAGCAAAGTCTCTGCAAAACCTCATTGATCCTAACTCCAAGAGGACAAAAAAAGAAACAAAGAGATGGTCTGGTTTAGGTTTCAGAATTGGATAA 1272 45.13 MQLGDTFSMLGQVERSIHCYEEGLKIQIEALGETDPRVGETCRYLAEARVQAMQFDEAESLCKKTLEIHSVHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRYDEAIFSYQKALTVFKSSRGDNHPSVASVFVRLAELYYKTGKLRESGSYCENALRIYAKPVPGTTAEEIAGGMTEISAIYESINEPEEALKLLQKALKLLEDKPGQQSTIAGIEARMGVMFYLVGRYGEARSSFESAVAKLRASGERKSPFFGVVLNQMGLACVQLFKIDEAVELFEEARGILEKECGPCHQDTIGVYTNLAATYDAMGRVEDAIEILEYVLKLREEQLGTANPDFDDEKKRLSELLKEAGKARNRKAKSLQNLIDPNSKRTKKETKRWSGLGFRIG* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1865269 1872643 - Vvi2g193 Vvi2g193 782892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g193 423 Pfam Tetratricopeptide repeat 120 181 - -
Vvi2g193 423 Pfam Tetratricopeptide repeat 291 363 - -
Vvi2g193 423 SUPERFAMILY TPR-like 125 362 IPR011990 GO:0005515
Vvi2g193 423 SMART tpr_5 163 196 IPR019734 GO:0005515
Vvi2g193 423 SMART tpr_5 39 72 IPR019734 GO:0005515
Vvi2g193 423 SMART tpr_5 121 154 IPR019734 GO:0005515
Vvi2g193 423 SMART tpr_5 289 322 IPR019734 GO:0005515
Vvi2g193 423 SMART tpr_5 81 114 IPR019734 GO:0005515
Vvi2g193 423 SMART tpr_5 206 239 IPR019734 GO:0005515
Vvi2g193 423 SMART tpr_5 331 364 IPR019734 GO:0005515
Vvi2g193 423 SMART tpr_5 247 280 IPR019734 GO:0005515
Vvi2g193 423 Coils Coil 219 239 - -
Vvi2g193 423 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 421 - -
Vvi2g193 423 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Vvi2g193 423 ProSiteProfiles TPR repeat profile. 121 154 IPR019734 GO:0005515
Vvi2g193 423 PANTHER - 1 421 - -
Vvi2g193 423 SUPERFAMILY TPR-like 2 154 IPR011990 GO:0005515
Vvi2g193 423 Gene3D Tetratricopeptide repeat domain 107 290 IPR011990 GO:0005515
Vvi2g193 423 Gene3D Tetratricopeptide repeat domain 291 402 IPR011990 GO:0005515
Vvi2g193 423 ProSiteProfiles TPR repeat profile. 331 364 IPR019734 GO:0005515
Vvi2g193 423 Coils Coil 372 392 - -
Vvi2g193 423 ProSiteProfiles TPR repeat profile. 206 239 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g193 - - - vvi:100246244 812.372
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g193 Vvi15g668 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68