Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g199 ATGAGGCTGTTGAAAGTGGCCACATGCAACCTAAATCAATGGGCGATGGATTTTGATGGTAATTTGAAGAACATTAAGGAGTCTATTTGTAGGGCTAAGGAGGCTGGGGCAGTGATTAGACTTGGTCCTGAGCTCGAGGTTACGGGCTATGGTTGCGAGGACCATTTCCTGGAACTGGACACCATTACTCATGCATGGGAATGTTTAAAAGAGATTTTAGTTGGTGATTGGACCGATGGCATATTCTGCAGCATTGGTATGCCTGTCATCAAAGAATCGGCACGTTACAACTGTCAAGTCTTATGTTTAAACAGAAAAATTGTCATGATACGCCCAAAGATGTGGCTTGCAAACAATGGCAATTACAGGGAACTCCGATGGTTCACAACATGGAAGCAAAAAGACGAGCTTGAGGACTTTCAGCTTCCTAGTGAAATTGCTGAGGCTTTGTCACAGAAATCAGTACCTTTTGGCTATGGATACGTTCGGTTCTTAGACACAGCTGTTGCTGTTGAAACCTGTGAAGAGCTTTTTACTGCTATGGCTCCTCATGCTGAGCTTCAATTGAATGGCGTTGAAGTGTTTATGAATGCCAGTGGAAGCCACCACCAACTGCGAAAGCTTGATCTTCGAGTTCAAGCTTTTATTGGTGCTACTCATACTATTGGAGGGGTTTACATGTACAGTAATCAGCAAGGATGTGATGGTGGTCGGCTTTATTATGATGGATGTTCTTGCATTGTTGTCAATGGAAATATGGTTGCTCAAGGCTCACAATTTTCTTTGAAGGATGTTGAGGTTGTAGTTGCACAAGTAGATTTAGATGCGGTTGCTAGTTTTAGAGGATCTATAAGTAGTTTTCAGGAGCAAGCAAGTTCTTCCCGACCCAAAGTTTCATCAGTAGCAGTACCTGTCAGCCTTTGTCAGCCTTTTAACCTGAAAATGTCCCTTTCTGGCCCACTTAAGGTTAAGTATCACTTACCTGAAGAGGAAATAGCCTTTGGACCCAGTTGCTGGCTATGGGACTATTTAAGAAGAAGTGGAGCTTCTGGTTTTTTGCTTCCTCTTTCTGGTGGTGCAGATAGCTCCTCTGTTGCTGCGATTGTTGGCTGCATGTGCCAGCTTGTTGTAAAAGAAATTGCAGAGGGGGATGAACAAGTCAAAGCAGATGCAATTCGAATTGGACAGTATACTGACGGACAATTTCCCACTGACAGCAAAGAATTTGCAAAACGCATTTTTTACACTGTGTTCATGGGATCTGAGAATAGTTCTGAAGCCACAAGAAAACGAGCAAAGGTTTTAGCAGAGGAGATTGGCTCATGGCATCTTGATATTTGCATAGATGGTGTCATTACTGCCCTGCTTTCTTTGTTTCAAACTCTCACCGGAAAGAGACCACGCTATAAGGTAGATGGGGGATCAAACATCGAGAACTTAGGGTTGCAAAACATTCAAGCTCGAATCCGAATGGTGCTTGCCTTTATGTTAGCATCACTCATGCCTTGGGTTCATAACAAAGCAGGGTTTTACCTAGTTTTGGGTAGTGCCAATGTGGATGAAGCATTGCGTGGTTACCTGACAAAGTATGATTGCAGCTCAGCAGATATAAATCCAATAGGAGGTATCAGTAAGCAGGATCTTCGGGGATTTCTGCAATGGGCTGCAGTGCATCTTGGATACCCATCCTTAGCAGAAATTGAAGCAGCTCCACCCACTGCTGAACTGGAGCCCATACGAGCCAACTACAGCCAGTTGGATGAAGTTGACATGGGAATGACATATGAGGAACTCTCAGTCTATGGAAGGTTGCGCAAGATTTTCCACTGTGGTCCTGTATCCATGTTTAAGAATCTCTGCTACAAATGGGGTGGAAGATTAACTCCATCTGAGGTGGCCGAGAAAGTGAAGCATTTCTTCAAGTACTATTCAATCAACCGACACAAAATGACTGTGTTAACACCAGCCTATCATGCTGAGAGTTATTCACCCGAAGACAATAGGTTTGATCTTCGCCAGTTCCTCTACAACGCAAGATGGCCATATCAGTTTCGCAAGATCGACCAACTCGTGAGTGAGCTTGATGCTGATGGAGTTACCATTAAGAAAGAGCTTGGTGGAGGTGGGATGGGAGTTGTGGCGGCAGGCTCAAGCGATCCAAAGGCCGGCCTCTAG 2175 44.37 MRLLKVATCNLNQWAMDFDGNLKNIKESICRAKEAGAVIRLGPELEVTGYGCEDHFLELDTITHAWECLKEILVGDWTDGIFCSIGMPVIKESARYNCQVLCLNRKIVMIRPKMWLANNGNYRELRWFTTWKQKDELEDFQLPSEIAEALSQKSVPFGYGYVRFLDTAVAVETCEELFTAMAPHAELQLNGVEVFMNASGSHHQLRKLDLRVQAFIGATHTIGGVYMYSNQQGCDGGRLYYDGCSCIVVNGNMVAQGSQFSLKDVEVVVAQVDLDAVASFRGSISSFQEQASSSRPKVSSVAVPVSLCQPFNLKMSLSGPLKVKYHLPEEEIAFGPSCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAEGDEQVKADAIRIGQYTDGQFPTDSKEFAKRIFYTVFMGSENSSEATRKRAKVLAEEIGSWHLDICIDGVITALLSLFQTLTGKRPRYKVDGGSNIENLGLQNIQARIRMVLAFMLASLMPWVHNKAGFYLVLGSANVDEALRGYLTKYDCSSADINPIGGISKQDLRGFLQWAAVHLGYPSLAEIEAAPPTAELEPIRANYSQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYKWGGRLTPSEVAEKVKHFFKYYSINRHKMTVLTPAYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDQLVSELDADGVTIKKELGGGGMGVVAAGSSDPKAGL* 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1905456 1914484 - Vvi2g199 Vvi2g199 782898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g199 724 Pfam NAD synthase 339 599 IPR022310 -
Vvi2g199 724 PANTHER GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE 1 724 - -
Vvi2g199 724 Gene3D HUPs 328 695 IPR014729 -
Vvi2g199 724 Gene3D - 1 309 IPR036526 -
Vvi2g199 724 Pfam Carbon-nitrogen hydrolase 5 281 IPR003010 GO:0006807
Vvi2g199 724 SUPERFAMILY Carbon-nitrogen hydrolase 1 289 IPR036526 -
Vvi2g199 724 CDD GAT_Gln-NAD-synth 5 293 - -
Vvi2g199 724 TIGRFAM nadE: NAD+ synthetase 409 651 IPR003694 GO:0003952|GO:0004359|GO:0005737|GO:0009435
Vvi2g199 724 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 318 662 - -
Vvi2g199 724 PANTHER NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE 1 724 IPR003694 GO:0003952|GO:0004359|GO:0005737|GO:0009435
Vvi2g199 724 Hamap Glutamine-dependent NAD(+) synthetase [nadE]. 4 681 IPR014445 GO:0003952|GO:0005524|GO:0009435
Vvi2g199 724 PIRSF NADS_GAT 1 683 IPR014445 GO:0003952|GO:0005524|GO:0009435
Vvi2g199 724 CDD NAD_synthase 328 650 IPR003694 GO:0003952|GO:0004359|GO:0005737|GO:0009435
Vvi2g199 724 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 4 274 IPR003010 GO:0006807
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g199 K01950 E6.3.5.1, NADSYN1, QNS1, nadE; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] - vvi:100263393 1449.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g199 . . . . . . . . . . Cma02g00915 . Car02g00666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00922 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004159 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 4 1 42