Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g200 ATGACTGAAGTAGCGAGCTCAGTGATCCACGAAGTGCTAGGGCGGAGAGCTCTGGATGTGGATCAGCCAATCATCGACTACATCGTCAACGTCCTAGCCGATGATGACTTCGATTTCGGCTTCCAAGGCGAAGGCGCCGTCGACGCCATCGGAGAACTCCTCGTTGACTCCGGATGCGTCTCCGATGACGCTGAATGCCGCTCTGTTTGCAGCATACTATGTGAAAAATTTGGAAAGCATGGATTGGTTAAGCCAAAACCTGCTGTGCGAAGCCTTGCAGCGCCCTTGAGAATGTTTGATGGAATGGATGAAGAGGAAGTTCCAAAGAAGAAACCTGAGGTGACTGATGGTCCAATTCTAACTGAGCGTGACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGCAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATGCCTGTTGTGTGTGTAAACCATGACAACAGTAGTGGACCAGCTATCAAGGATATCCATTTGGAGAACTTCAATATTTCCATAGGTGGTCGCGATCTCATTGTAGATGGTTCAGTCACACTCTCTTATGGAAGGCACTATGGCCTTGTAGGAAGAAATGGTACTGGCAAAACAACTTTCCTTAGGTACATGGCTATGCATGCTATTGATGGTATTCCTAAGAACTGCCAGATATTACATGTGGAGCAAGAAGTGGTTGGTGATGACATATCAGCGTTGCAATGTGTTCTTAACACTGATATTGAAAGAACCCAACTTTTGGAAGAAGAAGCTCACCTACTTGCGCAACAGCGAGAATTGGAGTTTGAAGGTGCAACTGGAAAGAGCCAAGGGGAACTGAATGGGGATATTGACAAAGATGTTGTTGGAAAAAGGCTTGAAGAGATATACAAAAGGCTTGAGTTCATTGATGCATACTCCGCTGAGTCGCGTGCAGGTTCCATTCTTGCGGGTCTCAGTTTCTCTCCAGAAATGCAGCATAAAGCGACAAAAACCTTTTCTGGAGGATGGCGAATGCGAATTGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATTTATTACTACTTGATGAACCCACGAACCATCTTGACCTTCATGCTGTTTTATGGCTGGAGACTTACCTGGTGAAATGGCCAAAAACAGTTATAGTTGTTTCTCATGCTAGAGAATTCTTGAACACGGTGGTCACTGATATTCTGCATTTACATGGGCAAAAATTGAACTCTTACAAGGGGGATTATGATACATTTGAGAGGACACGAGAGGAACAGCTCAAGAATCAACAGAAAGCATTTGAGTCAAATGAACGGTCTAGATCCCATATGCAGTCTTTCATCGATAAGTTCCGATACAATGCCAAGCGGGCAGCTCTTGTACAGTCAAGAATCAAGGCATTGGATCGGTTGGGTCATGTGGATGAGGTTATTAATGATCCTGACTACAAATTTGAGTTTCCAACTCCAGACGACAGACCAGGCCTCCCTATAATTAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGCCCCTTATTATTTAAGAATTTGAATTTTGGGATAGATCTAGACAGCCGCATTGCAATGGTTGGGCCAAATGGCATTGGTAAATCAACTATACTCAAATTGATTGCAGGGGAACTTCAACCAAGCTCTGGAACGGTATTCCGTTCGGCCAAGGTTCGCATTGCTGTGTTCAGTCAACACCATGTTGATGGCCTAGACCTATCTTCAAATCCCCTTTTGTATATGATGCGCTGCTACCCAGGGGTGCCAGAACAGAAGCTCCGAGCTCATTTAGGTTCATTTGGTGTAACAGGAAATCTTGCTCTTCAGCCCATGTACACTTTATCTGGTGGTCAGAAAAGCAGAGTTGCATTTGCAAAAATAACTTTCAAAAAACCTCACATCATACTTCTTGATGAACCATCAAATCATCTTGATTTGGATGCTGTGGAGGCACTGATTCAAGGCCTTGTTCTGTTCCAAGGAGGCGTACTCATGGTCAGTCACGATGAGCATTTGATATCTGGAAGCGTAGAGGAGCTGTGGGTGGTTTCCGAAGGAAAGGTTTCCCCTTTCCATGGGACGTTCCACGATTACAAGAAGATACTTCAGTCATCGTAG 2151 44.86 MTEVASSVIHEVLGRRALDVDQPIIDYIVNVLADDDFDFGFQGEGAVDAIGELLVDSGCVSDDAECRSVCSILCEKFGKHGLVKPKPAVRSLAAPLRMFDGMDEEEVPKKKPEVTDGPILTERDRAKLERRKRKDERQREQQYQMHLAEMEAAKAGMPVVCVNHDNSSGPAIKDIHLENFNISIGGRDLIVDGSVTLSYGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDISALQCVLNTDIERTQLLEEEAHLLAQQRELEFEGATGKSQGELNGDIDKDVVGKRLEEIYKRLEFIDAYSAESRAGSILAGLSFSPEMQHKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLVKWPKTVIVVSHAREFLNTVVTDILHLHGQKLNSYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQSFIDKFRYNAKRAALVQSRIKALDRLGHVDEVINDPDYKFEFPTPDDRPGLPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVEELWVVSEGKVSPFHGTFHDYKKILQSS* 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1919316 1929177 - Vvi2g200 Vvi2g200 782899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g200 716 PANTHER NON-TRANSPORTER ABC PROTEIN 121 715 - -
Vvi2g200 716 MobiDBLite consensus disorder prediction 105 141 - -
Vvi2g200 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 705 IPR027417 -
Vvi2g200 716 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 715 - -
Vvi2g200 716 Pfam ABC transporter 523 653 IPR003439 GO:0005524
Vvi2g200 716 Pfam ABC transporter 194 370 IPR003439 GO:0005524
Vvi2g200 716 SMART AAA_5 531 698 IPR003593 -
Vvi2g200 716 SMART AAA_5 199 416 IPR003593 -
Vvi2g200 716 CDD ABCF_EF-3 175 415 - -
Vvi2g200 716 ProSitePatterns ABC transporters family signature. 625 639 IPR017871 GO:0005524
Vvi2g200 716 Gene3D - 469 716 IPR027417 -
Vvi2g200 716 Gene3D - 128 451 IPR027417 -
Vvi2g200 716 CDD ABCF_EF-3 506 698 - -
Vvi2g200 716 Pfam ABC transporter 409 489 IPR032781 -
Vvi2g200 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 438 IPR003439 GO:0005524
Vvi2g200 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 440 IPR027417 -
Vvi2g200 716 Coils Coil 125 145 - -
Vvi2g200 716 ProSitePatterns ABC transporters family signature. 342 356 IPR017871 GO:0005524
Vvi2g200 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 506 715 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g200 K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 - vvi:100256523 1382.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo19g00150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011577 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30