Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g201 ATGGCTGTTACCGAAGCTTCATCGCAGTGCTCTCCTGTGAAGCCCACCACCCCACTCGTCACCTTCCTTGATCGCCTCCAAGAAACGGCCTTCAAAACCTATGGCAACTCCGACTTCGACCCAAAGCTTTACGTGGATTTGTCTCTGAAATTCAATCTCTCAGACACAGAGGAGGCTTTTAAGAAGCTACCCAGGTCTGAAAATGGGTCGGTTTCGGTTGAGATTTTGGAGGGGTTTATGGGAGAGTACATGCGAGGTGCAGGGGAAGATTTGGTGGAGGTTGTGCCGGAGGATTATGTGCCGGAGCCGACGGGGTTCTTGCCGAAGGTGGAGATTTCGAACGGGGTTCGGGATCGGCCGGACCTGCACACTCTGCTTCCTCTTCCTAATCCAGTGGTGATTCCTGGATCGAGATTTAGAGAGGTTTACTATTGGGATTCTTACTGGGTTATTCGGGGCTTGCTAGCAAGTAAAATGCATGAGACGGCAAAAGCAATTGTTGCTAATCTGATTTCACTTATCGATGAATATGGTTATGTCCTAAACGGTGCAAGGGCATATTACAGCAATCGGAGCCAGCCCCCGCTCCTGAGTTCCATGATCTATGAAATATACAAGAGAACGGGTGATAAAGAAATGGTGAGAAAGTCTCTCCCTGCTTTGCTCAAGGAACATCAGTTTTGGAATTCAGGGAAACATAAGATGACCATTCAGGATGATCAAGCCTGTAATCACACTTTGAGTCGGTACTATGCAATGTGGGATAAACCGAGACCAGAGTCTTCAACTAATGACAAGGAGTCTGCTTCCAAGATCTTGGATGCTTCGGAGAAACAGCAATTTTACAGGGAACTGGCTTCAACTGCTGAATCTGGATGGGATTTCAGCACAAGATGGATGAGGAATTCTTCAGATTTCACGACATTGGCTACAACATCAATTCTACCCGTGGATTTGAATGCATTTATACTGAAGATGGAGCTTGACATAGCCTCCTTGGCAAAAGTTATTGGAGAAAATACCATCTCTGAACGCTTTGTGGAAGCTTCTCAAGGGAGAAAAAAGGCAATGGACTCTGTTTTCTGGAATGCAAAGATGGGACAATGGGTTGACTACTGGCTCGGTGACAATTCCACTTCATGCAAGGAAGTTCATAAATTAGAAGCTTCAAACCAGAACGAGAACGTGTTTGCTTCAAACTTTGTTCCTCTATGGATTGAGTTGTTTAACTCGGATGCTTCTGTGGTGGAGAAAGTTATGGAAAGTTTCCAAAGTTCGGGTTTGCTTTGCTCTGCTGGGATTGCAACTTCCTTGACAAATTCGGGACAACAATGGGATTTTCCAAATGGTTGGGCTCCAATTCAACACATGATAGTTGAAGGCCTGGTGAGATCTGGATTGAAAGAAGCAAGGTTGATGGCAGAAGATATTGCTATGAGGTGGATCAGAACCAACTATGCTGCCTACAAGAACACAAGCACAATGCTTGAAAAATATGATGTGGAAGAATGTGGAAAAATTGGAGGTGGCGGTGAATACATACCCCAGACTGGTTTTGGCTGGACAAATGGTGTTGTATTGGCATTCCTGGAGGAGTTTGGATGGACTAAGGACCAGAAGCTAGATTGCCAGTAA 1635 45.38 MAVTEASSQCSPVKPTTPLVTFLDRLQETAFKTYGNSDFDPKLYVDLSLKFNLSDTEEAFKKLPRSENGSVSVEILEGFMGEYMRGAGEDLVEVVPEDYVPEPTGFLPKVEISNGVRDRPDLHTLLPLPNPVVIPGSRFREVYYWDSYWVIRGLLASKMHETAKAIVANLISLIDEYGYVLNGARAYYSNRSQPPLLSSMIYEIYKRTGDKEMVRKSLPALLKEHQFWNSGKHKMTIQDDQACNHTLSRYYAMWDKPRPESSTNDKESASKILDASEKQQFYRELASTAESGWDFSTRWMRNSSDFTTLATTSILPVDLNAFILKMELDIASLAKVIGENTISERFVEASQGRKKAMDSVFWNAKMGQWVDYWLGDNSTSCKEVHKLEASNQNENVFASNFVPLWIELFNSDASVVEKVMESFQSSGLLCSAGIATSLTNSGQQWDFPNGWAPIQHMIVEGLVRSGLKEARLMAEDIAMRWIRTNYAAYKNTSTMLEKYDVEECGKIGGGGEYIPQTGFGWTNGVVLAFLEEFGWTKDQKLDCQ* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1935458 1939794 + Vvi2g201 Vvi2g201 782900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g201 544 ProSitePatterns Trehalase signature 2. 444 453 IPR018232 GO:0004555|GO:0005991
Vvi2g201 544 PRINTS Glycosyl hydrolase family 37 signature 177 195 IPR001661 GO:0004555|GO:0005991
Vvi2g201 544 PRINTS Glycosyl hydrolase family 37 signature 247 264 IPR001661 GO:0004555|GO:0005991
Vvi2g201 544 PRINTS Glycosyl hydrolase family 37 signature 282 299 IPR001661 GO:0004555|GO:0005991
Vvi2g201 544 PRINTS Glycosyl hydrolase family 37 signature 314 331 IPR001661 GO:0004555|GO:0005991
Vvi2g201 544 PRINTS Glycosyl hydrolase family 37 signature 437 453 IPR001661 GO:0004555|GO:0005991
Vvi2g201 544 PRINTS Glycosyl hydrolase family 37 signature 517 530 IPR001661 GO:0004555|GO:0005991
Vvi2g201 544 SUPERFAMILY Six-hairpin glycosidases 34 535 IPR008928 GO:0005975
Vvi2g201 544 PANTHER TREHALASE 6 544 IPR001661 GO:0004555|GO:0005991
Vvi2g201 544 Gene3D - 33 543 IPR012341 GO:0005975
Vvi2g201 544 PANTHER TREHALASE 6 544 - -
Vvi2g201 544 Pfam Trehalase 111 534 IPR001661 GO:0004555|GO:0005991
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g201 K01194 TREH, treA, treF; alpha,alpha-trehalase [EC:3.2.1.28] - vvi:100246241 1083.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi2g201 . 12 542 Trehalose Biosynthesis Gene Families AT4G24040 58.8 8.9e-187 650.6
Vvi12g130 ECH 1 777 Trehalose Biosynthesis Gene Families AT1G06410 72.5 0.0e+00 1239.6
Vvi10g251 ECH 1 774 Trehalose Biosynthesis Gene Families AT1G06410 70.6 0.0e+00 1213.4
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT1G06410 57.7 7.2e-264 907.1
Vvi3g510 . 1 543 Trehalose Biosynthesis Gene Families AT1G06410 64.5 5.9e-242 834.3
Vvi17g717 ECH 1 699 Trehalose Biosynthesis Gene Families AT1G06410 52.0 5.2e-238 821.2
Vvi2g697 . 1 217 Trehalose Biosynthesis Gene Families AT1G06410 63.1 8.4e-87 318.9
Vvi2g696 . 1 242 Trehalose Biosynthesis Gene Families AT1G06410 62.8 2.1e-82 304.3
Vvi19g27 ECH 78 690 Trehalose Biosynthesis Gene Families AT1G16980 65.0 2.1e-242 835.5
Vvi10g298 . 83 363 Trehalose Biosynthesis Gene Families AT1G16980 64.9 7.6e-112 401.7
Vvi10g299 ECH 19 299 Trehalose Biosynthesis Gene Families AT1G16980 62.3 2.7e-101 366.7
Vvi17g717 ECH 1 716 Trehalose Biosynthesis Gene Families AT1G23870 60.3 8.3e-300 1026.5
Vvi10g251 ECH 1 783 Trehalose Biosynthesis Gene Families AT1G23870 56.7 9.5e-288 986.5
Vvi12g130 ECH 1 778 Trehalose Biosynthesis Gene Families AT1G23870 55.7 2.2e-284 975.3
Vvi1g745 ECH 1 644 Trehalose Biosynthesis Gene Families AT1G23870 56.5 1.2e-266 916.4
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT1G23870 57.1 1.2e-258 889.8
Vvi3g510 . 1 543 Trehalose Biosynthesis Gene Families AT1G23870 51.0 9.1e-190 661.0
Vvi2g696 . 3 244 Trehalose Biosynthesis Gene Families AT1G23870 61.6 1.5e-83 308.1
Vvi2g697 . 1 223 Trehalose Biosynthesis Gene Families AT1G23870 58.4 2.2e-79 294.3
Vvi17g717 ECH 5 718 Trehalose Biosynthesis Gene Families AT1G60140 59.5 1.4e-291 999.2
Vvi10g251 ECH 1 775 Trehalose Biosynthesis Gene Families AT1G60140 55.6 2.1e-279 958.7
Vvi12g130 ECH 1 781 Trehalose Biosynthesis Gene Families AT1G60140 54.8 9.8e-277 949.9
Vvi1g745 ECH 1 644 Trehalose Biosynthesis Gene Families AT1G60140 57.0 5.6e-272 934.1
Vvi1g516 . 1 696 Trehalose Biosynthesis Gene Families AT1G60140 56.0 4.9e-252 867.8
Vvi2g696 . 3 251 Trehalose Biosynthesis Gene Families AT1G60140 57.8 3.4e-80 297.0
Vvi2g697 . 23 223 Trehalose Biosynthesis Gene Families AT1G60140 64.7 4.1e-73 273.5
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT1G68020 74.3 0.0e+00 1175.6
Vvi12g130 ECH 1 770 Trehalose Biosynthesis Gene Families AT1G68020 59.7 2.6e-301 1031.6
Vvi10g251 ECH 1 772 Trehalose Biosynthesis Gene Families AT1G68020 59.8 4.4e-301 1030.8
Vvi17g717 ECH 1 701 Trehalose Biosynthesis Gene Families AT1G68020 52.5 3.4e-245 845.1
Vvi3g510 . 1 558 Trehalose Biosynthesis Gene Families AT1G68020 54.0 6.0e-210 728.0
Vvi2g696 . 1 243 Trehalose Biosynthesis Gene Families AT1G68020 68.3 8.4e-95 345.5
Vvi2g697 . 1 223 Trehalose Biosynthesis Gene Families AT1G68020 63.0 3.1e-89 327.0
Vvi10g251 ECH 1 771 Trehalose Biosynthesis Gene Families AT1G70290 53.7 3.3e-258 888.3
Vvi17g717 ECH 1 718 Trehalose Biosynthesis Gene Families AT1G70290 54.8 4.8e-257 884.4
Vvi12g130 ECH 1 781 Trehalose Biosynthesis Gene Families AT1G70290 52.3 6.9e-256 880.6
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT1G70290 57.0 9.1e-248 853.6
Vvi1g745 ECH 1 644 Trehalose Biosynthesis Gene Families AT1G70290 51.0 1.6e-228 789.6
Vvi2g696 . 3 250 Trehalose Biosynthesis Gene Families AT1G70290 59.3 1.2e-82 305.1
Vvi2g697 . 1 223 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-75 281.6
Vvi19g27 ECH 1 879 Trehalose Biosynthesis Gene Families AT1G78580 78.2 0.0e+00 1434.9
Vvi10g299 ECH 19 482 Trehalose Biosynthesis Gene Families AT1G78580 71.9 7.5e-214 741.1
Vvi10g298 . 1 363 Trehalose Biosynthesis Gene Families AT1G78580 79.9 9.4e-164 574.7
Vvi10g251 ECH 1 774 Trehalose Biosynthesis Gene Families AT2G18700 53.4 3.7e-260 894.8
Vvi12g130 ECH 24 779 Trehalose Biosynthesis Gene Families AT2G18700 52.5 9.9e-253 870.2
Vvi17g717 ECH 41 699 Trehalose Biosynthesis Gene Families AT2G18700 55.0 1.5e-240 829.7
Vvi1g516 . 31 697 Trehalose Biosynthesis Gene Families AT2G18700 54.4 2.1e-231 799.3
Vvi2g696 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.1e-77 287.7
Vvi2g697 . 29 223 Trehalose Biosynthesis Gene Families AT2G18700 62.6 1.1e-73 275.4
Vvi10g251 ECH 1 768 Trehalose Biosynthesis Gene Families AT4G17770 61.2 1.1e-304 1042.7
Vvi12g130 ECH 1 765 Trehalose Biosynthesis Gene Families AT4G17770 60.9 5.7e-301 1030.4
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT4G17770 65.1 1.3e-297 1019.2
Vvi17g717 ECH 1 696 Trehalose Biosynthesis Gene Families AT4G17770 52.7 2.2e-252 869.0
Vvi3g510 . 1 543 Trehalose Biosynthesis Gene Families AT4G17770 54.1 1.4e-201 700.3
Vvi2g697 . 1 223 Trehalose Biosynthesis Gene Families AT4G17770 72.9 2.5e-102 370.5
Vvi2g696 . 5 237 Trehalose Biosynthesis Gene Families AT4G17770 74.7 7.1e-102 369.0
Vvi19g27 ECH 85 873 Trehalose Biosynthesis Gene Families AT4G27550 64.9 2.3e-304 1041.6
Vvi10g299 ECH 6 480 Trehalose Biosynthesis Gene Families AT4G27550 62.4 5.8e-167 585.1
Vvi10g298 . 90 363 Trehalose Biosynthesis Gene Families AT4G27550 66.8 3.2e-109 393.3
Vvi19g27 ECH 1 879 Trehalose Biosynthesis Gene Families AT1G78580 78.2 0.0e+00 1434.9
Vvi10g299 ECH 19 482 Trehalose Biosynthesis Gene Families AT1G78580 71.9 7.5e-214 741.1
Vvi10g298 . 1 363 Trehalose Biosynthesis Gene Families AT1G78580 79.9 9.4e-164 574.7
Vvi19g27 ECH 78 690 Trehalose Biosynthesis Gene Families AT1G16980 65.0 2.1e-242 835.5
Vvi10g298 . 83 363 Trehalose Biosynthesis Gene Families AT1G16980 64.9 7.6e-112 401.7
Vvi10g299 ECH 19 299 Trehalose Biosynthesis Gene Families AT1G16980 62.3 2.7e-101 366.7
Vvi19g27 ECH 86 615 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.4e-189 659.4
Vvi10g298 . 91 363 Trehalose Biosynthesis Gene Families AT1G17000 58.2 1.5e-90 331.3
Vvi10g299 ECH 19 224 Trehalose Biosynthesis Gene Families AT1G17000 61.7 4.2e-69 260.0
Vvi19g27 ECH 85 873 Trehalose Biosynthesis Gene Families AT4G27550 64.9 2.3e-304 1041.6
Vvi10g299 ECH 6 480 Trehalose Biosynthesis Gene Families AT4G27550 62.4 5.8e-167 585.1
Vvi10g298 . 90 363 Trehalose Biosynthesis Gene Families AT4G27550 66.8 3.2e-109 393.3
Vvi10g251 ECH 1 768 Trehalose Biosynthesis Gene Families AT4G17770 61.2 1.1e-304 1042.7
Vvi12g130 ECH 1 765 Trehalose Biosynthesis Gene Families AT4G17770 60.9 5.7e-301 1030.4
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT4G17770 65.1 1.3e-297 1019.2
Vvi17g717 ECH 1 696 Trehalose Biosynthesis Gene Families AT4G17770 52.7 2.2e-252 869.0
Vvi3g510 . 1 543 Trehalose Biosynthesis Gene Families AT4G17770 54.1 1.4e-201 700.3
Vvi2g697 . 1 223 Trehalose Biosynthesis Gene Families AT4G17770 72.9 2.5e-102 370.5
Vvi2g696 . 5 237 Trehalose Biosynthesis Gene Families AT4G17770 74.7 7.1e-102 369.0
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT1G68020 74.3 0.0e+00 1175.6
Vvi12g130 ECH 1 770 Trehalose Biosynthesis Gene Families AT1G68020 59.7 2.6e-301 1031.6
Vvi10g251 ECH 1 772 Trehalose Biosynthesis Gene Families AT1G68020 59.8 4.4e-301 1030.8
Vvi17g717 ECH 1 701 Trehalose Biosynthesis Gene Families AT1G68020 52.5 3.4e-245 845.1
Vvi3g510 . 1 558 Trehalose Biosynthesis Gene Families AT1G68020 54.0 6.0e-210 728.0
Vvi2g696 . 1 243 Trehalose Biosynthesis Gene Families AT1G68020 68.3 8.4e-95 345.5
Vvi2g697 . 1 223 Trehalose Biosynthesis Gene Families AT1G68020 63.0 3.1e-89 327.0
Vvi12g130 ECH 1 777 Trehalose Biosynthesis Gene Families AT1G06410 72.5 0.0e+00 1239.6
Vvi10g251 ECH 1 774 Trehalose Biosynthesis Gene Families AT1G06410 70.6 0.0e+00 1213.4
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT1G06410 57.7 7.2e-264 907.1
Vvi3g510 . 1 543 Trehalose Biosynthesis Gene Families AT1G06410 64.5 5.9e-242 834.3
Vvi17g717 ECH 1 699 Trehalose Biosynthesis Gene Families AT1G06410 52.0 5.2e-238 821.2
Vvi2g697 . 1 217 Trehalose Biosynthesis Gene Families AT1G06410 63.1 8.4e-87 318.9
Vvi2g696 . 1 242 Trehalose Biosynthesis Gene Families AT1G06410 62.8 2.1e-82 304.3
Vvi10g251 ECH 1 771 Trehalose Biosynthesis Gene Families AT1G70290 53.7 3.3e-258 888.3
Vvi17g717 ECH 1 718 Trehalose Biosynthesis Gene Families AT1G70290 54.8 4.8e-257 884.4
Vvi12g130 ECH 1 781 Trehalose Biosynthesis Gene Families AT1G70290 52.3 6.9e-256 880.6
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT1G70290 57.0 9.1e-248 853.6
Vvi1g745 ECH 1 644 Trehalose Biosynthesis Gene Families AT1G70290 51.0 1.6e-228 789.6
Vvi2g696 . 3 250 Trehalose Biosynthesis Gene Families AT1G70290 59.3 1.2e-82 305.1
Vvi2g697 . 1 223 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-75 281.6
Vvi17g717 ECH 1 716 Trehalose Biosynthesis Gene Families AT1G23870 60.3 8.3e-300 1026.5
Vvi10g251 ECH 1 783 Trehalose Biosynthesis Gene Families AT1G23870 56.7 9.5e-288 986.5
Vvi12g130 ECH 1 778 Trehalose Biosynthesis Gene Families AT1G23870 55.7 2.2e-284 975.3
Vvi1g745 ECH 1 644 Trehalose Biosynthesis Gene Families AT1G23870 56.5 1.2e-266 916.4
Vvi1g516 . 1 695 Trehalose Biosynthesis Gene Families AT1G23870 57.1 1.2e-258 889.8
Vvi3g510 . 1 543 Trehalose Biosynthesis Gene Families AT1G23870 51.0 9.1e-190 661.0
Vvi2g696 . 3 244 Trehalose Biosynthesis Gene Families AT1G23870 61.6 1.5e-83 308.1
Vvi2g697 . 1 223 Trehalose Biosynthesis Gene Families AT1G23870 58.4 2.2e-79 294.3
Vvi17g717 ECH 5 718 Trehalose Biosynthesis Gene Families AT1G60140 59.5 1.4e-291 999.2
Vvi10g251 ECH 1 775 Trehalose Biosynthesis Gene Families AT1G60140 55.6 2.1e-279 958.7
Vvi12g130 ECH 1 781 Trehalose Biosynthesis Gene Families AT1G60140 54.8 9.8e-277 949.9
Vvi1g745 ECH 1 644 Trehalose Biosynthesis Gene Families AT1G60140 57.0 5.6e-272 934.1
Vvi1g516 . 1 696 Trehalose Biosynthesis Gene Families AT1G60140 56.0 4.9e-252 867.8
Vvi2g696 . 3 251 Trehalose Biosynthesis Gene Families AT1G60140 57.8 3.4e-80 297.0
Vvi2g697 . 23 223 Trehalose Biosynthesis Gene Families AT1G60140 64.7 4.1e-73 273.5
Vvi10g251 ECH 1 774 Trehalose Biosynthesis Gene Families AT2G18700 53.4 3.7e-260 894.8
Vvi12g130 ECH 24 779 Trehalose Biosynthesis Gene Families AT2G18700 52.5 9.9e-253 870.2
Vvi17g717 ECH 41 699 Trehalose Biosynthesis Gene Families AT2G18700 55.0 1.5e-240 829.7
Vvi1g516 . 31 697 Trehalose Biosynthesis Gene Families AT2G18700 54.4 2.1e-231 799.3
Vvi2g696 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.1e-77 287.7
Vvi2g697 . 29 223 Trehalose Biosynthesis Gene Families AT2G18700 62.6 1.1e-73 275.4
Vvi2g201 . 12 542 Trehalose Biosynthesis Gene Families AT4G24040 58.8 8.9e-187 650.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006557 1 3 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 38