Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g203 ATGCTTGATGCTCTGAAATACCTCCTCGGCTCATTCGGAGCAAGTGGGTATGGCTCCAAGTCCACTGCCGAAGAGGTAACTGAGAACTGCCCCGATCTGGGCTCCGTCACTGCTGTCATTACTGGTGCGACGTCGGGGATAGGGGCGGAGACGGCCCGGGTGCTGGCGAAGCGCGGGGCGAGGCTAGTGCTGCCGGCGCGGAGCCTGAAGGCTGCGGAGGAAGCGAAGGCTCGTATTGTGGCGGAGTTTCCCAATTCGGAGATCGTCGTCATGGCTCTCGATCTTAGTTCGCTCGACTCGGTTCGATGCTTCGTTTCGGAGTTCGAGTCTCTGGATTTGCCGCTCAATCTCCTCATAAACAACGCCGGGAAGTTCACTCACGAGCATGCTATCTCCGAAGATGGAATCGAGATGACCTTTGCTACCAATTATCTAGGTCATTTTCTATTGACCAAACTGTTACTAAATAAGATGATCGAAACGGCGAAAAAGACCGGCGTTCAAGGTCGCATCGTGAACGTATCGTCGACCATTCACAGCTGGTTTTCCGGCGACGTAATCCGTTATCTGGGGCTGATAACCAGAAACAAAAGTCAATACGATGCGACACGTGCTTATGCTGTCTCGAAGCTCGCCAATGTTTTGCACACCAAGGAACTTGCTCAGAGATTGAAGCAAATGGATGCGAACGTGACTGTGAATTGCGTTCATCCAGGGATCGTGAGAACGAGGCTCACCAGAGAAACCGAAGGCATCGTCACAGATCTGATCTTCTTCTTGACTTCAAAGTTCCTGAAGACAATTCCTCAGGCTGCAGCTACAACCTGCTACGTTGCAACGCATCCAAGACTCGTAAACGTTTCCGGAAAGTACTTTGCGGACTGCAACGAGGCATGGACATCTAAATTGGGATCCAACTCACAAGAAGCTTCCCGCCTGTGGTCCGCTTCCGAAATCATGACTGCCAGAGACTCCAGAGCAATCTTCGATCCACTCGACGCCTCAGATTAA 1011 51.93 MLDALKYLLGSFGASGYGSKSTAEEVTENCPDLGSVTAVITGATSGIGAETARVLAKRGARLVLPARSLKAAEEAKARIVAEFPNSEIVVMALDLSSLDSVRCFVSEFESLDLPLNLLINNAGKFTHEHAISEDGIEMTFATNYLGHFLLTKLLLNKMIETAKKTGVQGRIVNVSSTIHSWFSGDVIRYLGLITRNKSQYDATRAYAVSKLANVLHTKELAQRLKQMDANVTVNCVHPGIVRTRLTRETEGIVTDLIFFLTSKFLKTIPQAAATTCYVATHPRLVNVSGKYFADCNEAWTSKLGSNSQEASRLWSASEIMTARDSRAIFDPLDASD* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1944047 1946224 + Vvi2g203 Vvi2g203 782902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g203 336 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 324 - -
Vvi2g203 336 PANTHER RETINOL DEHYDROGENASE 4 324 - -
Vvi2g203 336 Pfam short chain dehydrogenase 37 249 IPR002347 -
Vvi2g203 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 295 IPR036291 -
Vvi2g203 336 CDD retinol-DH_like_SDR_c_like 37 314 - -
Vvi2g203 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Vvi2g203 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Vvi2g203 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Vvi2g203 336 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Vvi2g203 336 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Vvi2g203 336 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Vvi2g203 336 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vvi2g203 336 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vvi2g203 336 Gene3D - 22 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g203 - - - vvi:100261623 654.825
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g203 . . . Bda08g00756 . Bpe07g00255 . . . Cmo16g01268 Cma02g00912 . Car02g00663 . . Cpe14g01011 . . . . . . . . Cla07g00789 Cam07g0852 Cec07g0905 Cco07g0887 Clacu07g0827 Cmu07g0830 Cre07g1188 . . . . Lsi07g01120 . . Cme07g01644 . . . . . . . Bma12g00444 . Cmo02g00919 . . Cma16g01224 . Car16g01152 Cpe08g00909 . . . . . . . . . . . . . . . . . Chy07g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60