Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g208 ATGGGGAGTAGCAGTGAGGAAGAAGGAGATCGATTTTTTGATACGCGGGAGGAGTTTTCTGATTCGGCATCAGATGGCTCCGTGGATTTTAGGTCTAGTAATGGCGTTGTCGATGGCGATTCAGATAGTTTTGGGTATGGTTTGTGGATTAAGAACCCACAGAGTGTTAATGAGCGTCGTGATAAGTTCCTCAAATGGATGAATTTAGACATGGATCAAAATCGGATTACAAGCGAAGAGTCAGAGTCAGAGTCAGGAGATGTATGTTGTGACAAGATCAAAATTGAGACTGATAGAGCTACAGAAAACAGTGGGGCTGTGCTGCGGAATTCTGTTTCGGAAGACAGGGTTTCATCAATTCAATGCTCAATGAGTTTCCGGTCTAATGGTGAGGAATTGTTGGAAGGTGTAGGTTCCAACCGAGTGGTTTCTATGGAAGAATTTCAAAGAACAATTGGGTTGTCTCCTTTGGTTCAGCAACACTTGCAGAGAGAAGTGGAGGAGGTTAGCAATTCAGTGGATATGAAAAAGAAAGTGAAGAGAGGTTGGTTAAGGAGATTAGGTGCTGTGGCATGTGTTCGGGATAGGCAAGGGGAAGCTGGTTCCACTCATGCAACAGTGGGGGCAAAAACTCGGAGAGTTCGTGTTCATCCGTATAGGAAGCGGTCTAAGGAATTATCTTCTCTTTATAAAGGTCGAGAATTTGCTGCACACAGAGGCCCAATTTTGACAATGAAATTCAGCCTTGATGGGCATTACCTGGCTAGTGGTGGGGAAGATGGCATTGTGCGGGTGTGGAAGATAATTGAGGATGGGAGTTCGAAGGAAGTTGACATTCAAGACATTGATCCTTCATCTGTGTACTTCACTAGGAATGATTCAGAATTAACTCCTCTTGATGTGGATAAGGAGAAAAGGGGTAAGAAGAAGAGACTGAAGAGGTCATCAGATTCTACTTGCGTCATTATCCCACCAAAGGTCTTTCGAATATTGGAGGAACCACTGCATGAGTTCCAGGGACACAGTGGTGATATCTTGGATCTCTCATGGTCTAAGAAAGGGTATCTGCTGTCATCCTCTACTGATAAAACCGTTCGCCTGTGGCAAGTGGGTCAGGAGCAATGCCTCAGAGTTTTCTACCATAATGATTATGTGACTTGTGTAGATTTCAATCCTGTGGATGATAATTACTTCATCAGTGGTTCAATAGATGGAAAAGTTCGCATCTGGGAAGTTCATCGCCATAAAGTTGTTGATTGGACTGATATTAGAGATATAGTCACTGCTGTTTGTTATCGCCCTGATGGGAAGGGAGGAATTGTAGGCTCCATGGTTGGCAACTGCTGTTTTTATGATATCATAGATAACCACTTGCAAGTGGATGCCCAAATATACTTACAGGGCAAAAAGAAGTTACCGGGCAAAAGGATAACTGGATTTCAGTTTTCCCCGAGCGACCCAACCAAAGTAATGGTCGCTTCTGCTGATTCATTAGTCAGAATACTTTGTGGTGCTGATGTTATCTGCAAATTCAGGGGTGTTCGTAATGTAGGAAGTCACACATCCACATCCTTCACTGCAGACGGGAAACATATTGTTTCAGCAAGTGAGGATTCTAATGTCCACCTCTGGGACTACAATAACCAGGACAGGGCTTCTTCCCGAGCAAAGGATATTTGGTCTTGTGAGAGTTTCTTGTCCCACAATGCAACGATCGCTATACCCTGGTGTGGCATGAAAACCACCACAGAAACATGTCCGTCCCCAACATTGACCACAAAGTCTTTGCCAAGGGGTTCTGCAACTTGGCCAGAGGAGAAACTTCCAGACTCAAGTCCATTTTCACCTTCAATGCGTAGATCAGAGTACAAGTTTTTGAAGAGCGCTTGTCAAAACACAGCCAGCTCCCCTCACACATGGGGTCTTGTGATCGTCACTGCAGGCTGGGATGGATGGATCAGAACATACCACAATTATGGGTTACCTCACCGTCTTTGA 1998 44.49 MGSSSEEEGDRFFDTREEFSDSASDGSVDFRSSNGVVDGDSDSFGYGLWIKNPQSVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSEDRVSSIQCSMSFRSNGEELLEGVGSNRVVSMEEFQRTIGLSPLVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVRDRQGEAGSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLDGHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRNDSELTPLDVDKEKRGKKKRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQVGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTAVCYRPDGKGGIVGSMVGNCCFYDIIDNHLQVDAQIYLQGKKKLPGKRITGFQFSPSDPTKVMVASADSLVRILCGADVICKFRGVRNVGSHTSTSFTADGKHIVSASEDSNVHLWDYNNQDRASSRAKDIWSCESFLSHNATIAIPWCGMKTTTETCPSPTLTTKSLPRGSATWPEEKLPDSSPFSPSMRRSEYKFLKSACQNTASSPHTWGLVIVTAGWDGWIRTYHNYGLPHRL* 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1998984 2003828 - Vvi2g208 Vvi2g208 782907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g208 665 SMART WD40_4 331 369 IPR001680 GO:0005515
Vvi2g208 665 SMART WD40_4 459 503 IPR001680 GO:0005515
Vvi2g208 665 SMART WD40_4 413 452 IPR001680 GO:0005515
Vvi2g208 665 SMART WD40_4 228 267 IPR001680 GO:0005515
Vvi2g208 665 SMART WD40_4 504 545 IPR001680 GO:0005515
Vvi2g208 665 SMART WD40_4 372 411 IPR001680 GO:0005515
Vvi2g208 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 412 - -
Vvi2g208 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 378 IPR001680 GO:0005515
Vvi2g208 665 Gene3D - 467 577 IPR015943 GO:0005515
Vvi2g208 665 PANTHER WD REPEAT DOMAIN 44 594 665 IPR040324 -
Vvi2g208 665 PANTHER WD REPEAT DOMAIN 44 131 593 IPR040324 -
Vvi2g208 665 PANTHER WD REPEAT DOMAIN 44 1 130 IPR040324 -
Vvi2g208 665 Pfam WD domain, G-beta repeat 333 368 IPR001680 GO:0005515
Vvi2g208 665 Pfam WD domain, G-beta repeat 373 410 IPR001680 GO:0005515
Vvi2g208 665 Pfam WD domain, G-beta repeat 233 267 IPR001680 GO:0005515
Vvi2g208 665 Pfam WD domain, G-beta repeat 521 545 IPR001680 GO:0005515
Vvi2g208 665 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Vvi2g208 665 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Vvi2g208 665 PRINTS G protein beta WD-40 repeat signature 398 412 IPR020472 -
Vvi2g208 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 554 IPR001680 GO:0005515
Vvi2g208 665 SUPERFAMILY WD40 repeat-like 231 656 IPR036322 GO:0005515
Vvi2g208 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 268 IPR001680 GO:0005515
Vvi2g208 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 412 IPR001680 GO:0005515
Vvi2g208 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 370 - -
Vvi2g208 665 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 594 665 - -
Vvi2g208 665 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 130 - -
Vvi2g208 665 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 131 593 - -
Vvi2g208 665 MobiDBLite consensus disorder prediction 588 615 - -
Vvi2g208 665 Gene3D - 200 466 IPR015943 GO:0005515
Vvi2g208 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 268 - -
Vvi2g208 665 MobiDBLite consensus disorder prediction 1 34 - -
Vvi2g208 665 MobiDBLite consensus disorder prediction 7 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g208 - - - vvi:100249640 1307.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g208 Vvi16g1012 ECH
Vvi2g208 Vvi15g661 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34